RchiOBHm_Chr5g0058981

Formin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003076
Physical Location & Seq
Forward (+)
63790877 .. 63799455
8579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33559

Sequence Viewer

Length: 207 bp
ATGCCAGAGTTGCTGGATTTTGATAAGGATCTTATTCATTTGGAAGCTGCCTCTAAGATTCCATTGAAAGCTTTAGCTGAAGAAATGCAAGCCGTGAGTAAAGGTCCTGAAAAGGTTAAGCAAGAACTTGCTGCTGCTGAAAACGACGGTGTAATCTCTTCTGGTTTTCGAAAGGGGTTTACGATTTTCATATTGGGTTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FH2 PTEN_C2

Protein Analysis

68

Amino Acids

7.36

Weight (kDa)

4.97

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FH2 PF02181 1 - 61 4.5e-08 Formin Homology 2 Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 99
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 3 cut(s) 47, 71, 77
AluI AGCT 3 cut(s) 47, 71, 77
AlwI GGATC 1 cut(s) 36
ApeKI GCWGC 3 cut(s) 47, 131, 134
AspS9I GGNCC 1 cut(s) 104
AsuII TTCGAA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 34, 118, 121
BceAI ACGGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 48, 132, 135
BlsI GCNGC 3 cut(s) 49, 133, 136
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 27
BseXI GCAGC 3 cut(s) 34, 118, 121
Bsp119I TTCGAA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 28
BspPI GGATC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 169
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 54
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 34, 118, 121
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 104
CviJI RGCY 4 cut(s) 47, 71, 77, 92
CviKI_1 RGCY 4 cut(s) 47, 71, 77, 92
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 104
FaiI YATR 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 48, 132, 135
Fsp4HI GCNGC 3 cut(s) 48, 132, 135
GluI GCNGC 3 cut(s) 48, 132, 135
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 107, 204
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 54
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 18, 120, 147
Lsp1109I GCAGC 3 cut(s) 34, 118, 121
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 92, 150
MflI RGATCY 1 cut(s) 28
MnlI CCTC 1 cut(s) 61
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 28
NspV TTCGAA 1 cut(s) 169
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 3 cut(s) 49, 133, 136
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
PsuI RGATCY 1 cut(s) 28
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 48, 132, 135
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 104
SetI ASST 5 cut(s) 49, 73, 79, 106, 117
SfuI TTCGAA 1 cut(s) 169
SgeI CNNG 8 cut(s) 17, 26, 101, 106, 119, 134, 140, 174
SinI GGWCC 1 cut(s) 104
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 169
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 3 cut(s) 47, 131, 134
TspDTI ATGAA 2 cut(s) 26, 178
VpaK11BI GGWCC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.