RLG00000022826

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003076
Physical Location & Seq
Reverse (-)
12777057 .. 12779757
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022826

Sequence Viewer

Length: 348 bp
ATGAAAGTCTTTCACTACTATTACAGTTCAATTGCTTTGGGAGTCATTTCTGTTGAGAAGAGATGGAGCTATCCCTGGTCTCACTTGAAAGAAACCTCCTTAAAGGTATACAATGCCAATTATATATCGAAGTCTGTTTTCTTCTTTGGAAGGGATGAAGAAGCCGTGAAGAAATCAACGCTGGTCTGCGCCGAAACATTGAAGAACGAGGCAATCCAAGGATCTTTTCTAGAAGCATACTACACCACAATAAGGACTGTGACAGGCAAGCAGAAAAACATGGAACTACATCATCATCATCAGCACCATTGTCAGCTGCTAAATAGAAAAACAATTGAATTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.56

Weight (kDa)

9.34

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 5 cut(s) 30, 88, 202, 338, 343
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 2 cut(s) 69, 316
AluI AGCT 2 cut(s) 69, 316
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 57
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 74, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 74, 217
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 221
BspPI GGATC 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 74, 217
BssMI GATC 1 cut(s) 221
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 26, 259
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 191
CviAII CATG 1 cut(s) 280
CviJI RGCY 3 cut(s) 69, 164, 316
CviKI_1 RGCY 3 cut(s) 69, 164, 316
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 283
FaiI YATR 5 cut(s) 109, 123, 125, 238, 281
FatI CATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 191
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 26, 259
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 4 cut(s) 61, 88, 167, 249
Lsp1109I GCAGC 1 cut(s) 303
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 5 cut(s) 70, 133, 170, 181, 214
MfeI CAATTG 2 cut(s) 30, 333
MflI RGATCY 1 cut(s) 221
MluCI AATT 4 cut(s) 30, 118, 333, 338
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 2 cut(s) 106, 202
MseI TTAA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 2 cut(s) 30, 333
MvaI CCWGG 1 cut(s) 76
NdeII GATC 1 cut(s) 221
NlaIII CATG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 316
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 1 cut(s) 221
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 76
SetI ASST 4 cut(s) 71, 98, 108, 318
Sse9I AATT 4 cut(s) 30, 118, 333, 338
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 26, 259
TaqI TCGA 1 cut(s) 128
TasI AATT 4 cut(s) 30, 118, 333, 338
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 17, 171
XbaI TCTAGA 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.