Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003076

Physical Location & Seq

Genomic Coordinates Reverse (-)

5600701 .. 5606410

Gene Structure 5710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTATGGATCTATTTGCATTTTGCTGATGCTGAGAATGATCAAAGGCTTCGTGGAGATGGAAGTGAATTGCATGTCTTAATCTTTGATGAAGTCGATGCTATTTGTAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGGAGACGGGAAGAAGTTGTTGCTCGATTCGAACAAATCATCCCAGGGGTATTGTTCCTGCTACAGTTTGGGAAACCTCCTTAAAGGGAGGAAGAAGCCATGATGAAATCAAGGCTGGTCTGTGCCGAAACATTGAAGGTGATACCCACAATGGCAATCTTAATGAGAAGAACGAGGCAATCCAAGGATCTTTTCTAGAAGCATACTACACCACAATAAGGACTGTGACAGGCAAGCAGAAAAACATGGAACTACATCATCATCATCATCAGCACCATTGTCAGCTGCTAAACAGAAAAACAATTGAATTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

153

Amino Acids

17.7

Weight (kDa)

9.51

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003076)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155381 RchiOBHm_Chr5g0058981 RchiOBHm_Chr5g0076361 RchiOBHm_Chr5g0082591 RchiOBHm_Chr7g0187121
rosa_laevigata	RLG00000002482 RLG00000013344 RLG00000020042 RLG00000022826 RLG00000031491 RLG00000033579 RLG00000037047
rosa_roxburghii	Rroxscaffold_1G00061570 Rroxscaffold_4G00301770 Rroxscaffold_4G00327150 Rroxscaffold_5G00367140
rosa_rugosa	Rorug02G0401400 Rorug05G0384900 Rorug07G0201200
rosa_samantha	Rh2AG392300 Rh2BG247500 Rh2BG399800 Rh2DG414600 Rh2DG504800 Rh3AG072600 Rh3BG074600 Rh3CG074200 Rh4BG374200 Rh4CG310700 Rh4CG388200 Rh5AG329000 Rh5BG326100 Rh5BG396600 Rh5CG420400 Rh7AG176200 Rh7BG284900 Rh7CG312600
rosa_wichuraiana	Rw7G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	17, 337
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	278, 449, 454
AjnI	CCWGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AloI	GAACNNNNNNTCC	2 cut(s)	166, 198
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	17, 337
ApeKI	GCWGC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	19, 88
Bpu14I	TTCGAA	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	185, 186, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	185, 186, 325
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	3 cut(s)	133, 136, 139
BseXI	GCAGC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	9, 40, 329
BspCNI	CTCAG	1 cut(s)	25
BspPI	GGATC	2 cut(s)	17, 337
BspT104I	TTCGAA	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	185, 186, 325
BssMI	GATC	3 cut(s)	9, 40, 329
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	208, 367
Bst6I	CTCTTC	2 cut(s)	110, 134
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	3 cut(s)	12, 43, 332
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	9, 40, 329
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	9, 329
BstYI	RGATCY	2 cut(s)	9, 329
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	377
CviAII	CATG	3 cut(s)	74, 242, 388
CviJI	RGCY	4 cut(s)	49, 240, 257, 427
CviKI_1	RGCY	4 cut(s)	49, 240, 257, 427
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	11, 42, 331
DpnII	GATC	3 cut(s)	9, 40, 329
Eam1104I	CTCTTC	2 cut(s)	110, 134
EarI	CTCTTC	2 cut(s)	110, 134
Eco130I	CCWWGG	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	77, 245, 391
FaiI	YATR	5 cut(s)	7, 75, 243, 346, 389
FatI	CATG	3 cut(s)	73, 241, 387
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	77, 245, 391
HinfI	GANTC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	208, 367
HpyCH4V	TGCA	2 cut(s)	19, 73
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	77, 245, 391
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	9, 40, 329
LpnPI	CCDG	5 cut(s)	172, 199, 213, 243, 357
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	2 cut(s)	19, 88
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	11, 42, 331
MboI	GATC	3 cut(s)	9, 40, 329
MboII	GAAGA	9 cut(s)	124, 127, 142, 145, 148, 151, 165, 246, 322
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	2 cut(s)	9, 329
MluCI	AATT	3 cut(s)	68, 444, 449
MnlI	CCTC	8 cut(s)	111, 114, 117, 120, 135, 224, 229, 310
MseI	TTAA	3 cut(s)	80, 224, 303
MspA1I	CMGCKG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	9, 40, 329
NlaIII	CATG	3 cut(s)	77, 245, 391
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	172
PasI	CCCWGGG	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	9, 329
PvuII	CAGCTG	1 cut(s)	427
SaqAI	TTAA	3 cut(s)	80, 224, 303
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	9, 40, 329
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	3 cut(s)	221, 283, 429
SfaNI	GCATC	2 cut(s)	19, 88
SfcI	CTRYAG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	172
Sse9I	AATT	3 cut(s)	68, 444, 449
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	208, 367
TaqI	TCGA	3 cut(s)	96, 167, 172
TasI	AATT	3 cut(s)	68, 444, 449
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	80, 224, 303
Tru9I	TTAA	3 cut(s)	80, 224, 303
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	105, 261
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.