RLG00000033579

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003076
Physical Location & Seq
Reverse (-)
29201646 .. 29204856
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033579

Sequence Viewer

Length: 405 bp
ATGACTAAGAAGAAAGGAAAGGATAAACCTAATCTGACCAAAAGACCCGATCCAAAGCACTGTTTTACCCACATATTAGGACTCTTGGCAACATCAGCTCCTCCGGTGCAACCGATTTGCGGTGATGCAGGAGTTTACGACTGTCAGATTGGGTTCGTCATCCACAAGGAGAAGGAAGGCGATTTTTGGAATTGCGTTGAGGAGAGCAAGAGAGCTGCAGGGATTTCAATAAACAAGAACAACTTGAGGGACCAAAGCCTGAATGAAGTCCAGGGACACACCTATTCCAAAGAGAATGGTGTTGGTGGTGTCATGGGTATGTGTGAAAAACAGGGGGAATTTGATGCCTGTGTGTTTGGGAGTATTAGCAAGGACCACCTAGGGAACCAAAATATAGCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.63

Weight (kDa)

7.62

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 228
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 98, 215
AluI AGCT 2 cut(s) 98, 215
AlwI GGATC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 250, 373
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 2 cut(s) 250, 373
AvrII CCTAGG 1 cut(s) 379
BbvI GCAGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 272
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 216
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 2 cut(s) 250, 373
BmgT120I GGNCC 2 cut(s) 250, 373
BmiI GGNNCC 2 cut(s) 251, 386
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 2 cut(s) 115, 334
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 271, 379
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 271, 379
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 90, 215
BseXI GCAGC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 2 cut(s) 263, 288
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 263, 288
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 251, 386
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 271, 379
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 62, 143
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 250, 373
CviAII CATG 1 cut(s) 313
CviJI RGCY 4 cut(s) 98, 215, 258, 398
CviKI_1 RGCY 4 cut(s) 98, 215, 258, 398
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 250, 373
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 1 cut(s) 316
FaiI YATR 4 cut(s) 74, 314, 320, 395
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 2 cut(s) 263, 288
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 380
GluI GCNGC 1 cut(s) 216
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 316
HinfI GANTC 1 cut(s) 81
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 36, 147
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 166, 170
HpyCH4III ACNGT 2 cut(s) 62, 143
HpyCH4V TGCA 3 cut(s) 109, 128, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 8 cut(s) 114, 117, 204, 257, 272, 284, 317, 361
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 115, 334
MaeI CTAG 1 cut(s) 380
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 22
MluCI AATT 2 cut(s) 190, 338
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 3 cut(s) 111, 193, 240
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 251, 386
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 251, 386
PspPI GGNCC 2 cut(s) 250, 373
PstI CTGCAG 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 317
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 2 cut(s) 250, 373
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 272
SetI ASST 5 cut(s) 31, 100, 217, 284, 381
SfaNI GCATC 2 cut(s) 115, 334
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 2 cut(s) 250, 373
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 190, 338
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 62, 143
TasI AATT 2 cut(s) 190, 338
TscAI CASTG 1 cut(s) 65
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 250, 373
XapI RAATTY 1 cut(s) 338
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.