Rh7CG312600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003076
Physical Location & Seq
Forward (+)
33262555 .. 33273176
10622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG312600.1

Sequence Viewer

Length: 333 bp
ATGGTTTACCTCTCCAACAGGCCAAAAGGAAAGCCGGTTCTCATTCAAGAGGTTCTCCAGGCATTCATGTGCTTTCCAATGCAAAGCTTGACTCACCCTGGCACAAGGTCTCTTTTCTTCTTTGGAAGGGAGGAAGAAGCCGTGAAGAAATTAAGGCTGGTCTGCGCCGAAACATTGAAGATGTCAACAGAAAAACAAAAATCCCAAGTTACAGAGATAATTCGTCATCAAGTTCCTCAGGGTCGACTTCGTTGTCTTCAACTTCCACTCCCAGGAGGACAACTACCACCTGAACAGCCGAGTCCTCCAACGGCTGATCCACTGCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

9.45

Isoelectric Point (pI)

75.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 244
AclWI GGATC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 3 cut(s) 47, 178, 260
AjnI CCWGG 3 cut(s) 57, 97, 271
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 311
AoxI GGCC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 248
BceAI ACGGC 2 cut(s) 125, 327
BciT130I CCWGG 3 cut(s) 59, 99, 273
BcoDI GTCTC 1 cut(s) 114
Bme1390I CCNGG 3 cut(s) 59, 99, 273
BmrFI CCNGG 3 cut(s) 59, 99, 273
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 97, 271
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 237
BseBI CCWGG 3 cut(s) 59, 99, 273
BseDI CCNNGG 2 cut(s) 97, 271
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 316
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 97, 271
BssMI GATC 1 cut(s) 316
Bst2UI CCWGG 3 cut(s) 59, 99, 273
BstDEI CTNAG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 316
BstNI CCWGG 3 cut(s) 59, 99, 273
BstSCI CCNGG 3 cut(s) 57, 97, 271
BstV2I GAAGAC 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 34
CviAII CATG 1 cut(s) 67
CviJI RGCY 7 cut(s) 22, 34, 87, 140, 157, 298, 314
CviKI_1 RGCY 7 cut(s) 22, 34, 87, 140, 157, 298, 314
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DrdI GACNNNNNNGTC 1 cut(s) 252
DseDI GACNNNNNNGTC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 237
EcoRII CCWGG 3 cut(s) 57, 97, 271
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FatI CATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 244
GlaI GCGC 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 2 cut(s) 186, 245
HindII GTYRAC 2 cut(s) 186, 245
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 91, 301
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 7, 186, 245
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 3 cut(s) 7, 186, 245
HpyAV CCTTC 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 5 cut(s) 109, 146, 157, 190, 248
MluCI AATT 2 cut(s) 149, 219
MlyI GAGTC 2 cut(s) 85, 310
MmeI TCCRAC 2 cut(s) 39, 332
MnlI CCTC 6 cut(s) 20, 43, 124, 246, 269, 315
MseI TTAA 2 cut(s) 152, 331
MslI CAYNNNNRTG 1 cut(s) 67
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 59, 99, 273
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 3 cut(s) 59, 99, 273
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 324
PctI GAATGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 85, 309
PpsI GAGTC 2 cut(s) 85, 309
Psp6I CCWGG 3 cut(s) 57, 97, 271
PspGI CCWGG 3 cut(s) 57, 97, 271
RseI CAYNNNNRTG 1 cut(s) 67
SalI GTCGAC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 152, 331
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 2 cut(s) 85, 310
ScrFI CCNGG 3 cut(s) 59, 99, 273
SetI ASST 5 cut(s) 12, 54, 89, 110, 292
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 2 cut(s) 149, 219
StyD4I CCNGG 3 cut(s) 57, 97, 271
TaqI TCGA 1 cut(s) 244
TasI AATT 2 cut(s) 149, 219
Tru1I TTAA 2 cut(s) 152, 331
Tru9I TTAA 2 cut(s) 152, 331
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.