Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003076

Physical Location & Seq

Genomic Coordinates Reverse (-)

49028518 .. 49032129

Gene Structure 3612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACTTCGGTTGGGGGAGGCCGGTGCCGGTTCGAAGTGGCTCCAGTAACAAATTTGATGGGAAGTTGTTTGCTGGGACTAATCAAAGAAAGAAGTATTGATTTTGAGGTTTGCCTTTTGACTCGGACTCTACAAGCTTTGGCGGAGGATGCAGAGTTCACAAGTTCAATTGAATTCACGACTGAGTGGTTATTGATGAAACCAAGAACTATATATGAAGCCTTGAATAAGATCTCTTCTTCTTCCTCTGGGATAAGATCTGATCATTTGAGAATATCTTGCTCCTATGATTATAATAAATACATTTTTGGGTTTGCAAGGTTTTTGACCGGCGGAGGCTTGGTAGGAGGACCGGAATGGCGGCGACCGGTCGAGTTGGACGGAGGAGTCGTACGGGGACGTGGTGGAGGGGGTGGCCGGATTGATCCGGTTTGGAGGGTCCGTGGGTGGTTGGTGGAGTGGGGCTACTTTGATCTCTCGGTGGTTATGTTGGGCGAGCTCCAATCGGATGGGATCCGTCCTCCGATCCGGTTTGGTCCGGTGGTTGGCGGGGATGGGAAACTCCGGTTCAAGGGTGATGGCCGGTTCAACCACGATCCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.15

Weight (kDa)

8.39

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003076)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155381 RchiOBHm_Chr5g0058981 RchiOBHm_Chr5g0076361 RchiOBHm_Chr5g0082591 RchiOBHm_Chr7g0187121
rosa_laevigata	RLG00000002482 RLG00000013344 RLG00000020042 RLG00000022826 RLG00000031491 RLG00000033579 RLG00000037047
rosa_roxburghii	Rroxscaffold_1G00061570 Rroxscaffold_4G00301770 Rroxscaffold_4G00327150 Rroxscaffold_5G00367140
rosa_rugosa	Rorug02G0401400 Rorug05G0384900 Rorug07G0201200
rosa_samantha	Rh2AG392300 Rh2BG247500 Rh2BG399800 Rh2DG414600 Rh2DG504800 Rh3AG072600 Rh3BG074600 Rh3CG074200 Rh4BG374200 Rh4CG310700 Rh4CG388200 Rh5AG329000 Rh5BG326100 Rh5BG396600 Rh5CG420400 Rh7AG176200 Rh7BG284900 Rh7CG312600
rosa_wichuraiana	Rw7G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AasI	GACNNNNNNGTC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	24
AciI	CCGC	4 cut(s)	143, 333, 361, 549
AclWI	GGATC	5 cut(s)	419, 508, 520, 521, 590
AcoI	YGGCCR	2 cut(s)	415, 580
AcsI	RAATTY	2 cut(s)	52, 173
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	3 cut(s)	545, 571, 598
AgeI	ACCGGT	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	168, 173, 226, 571, 589
AjiI	CACGTC	1 cut(s)	401
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	137, 499
AluI	AGCT	2 cut(s)	137, 499
Alw21I	GWGCWC	1 cut(s)	501
AlwI	GGATC	5 cut(s)	419, 508, 520, 521, 590
AoxI	GGCC	3 cut(s)	19, 415, 580
ApoI	RAATTY	2 cut(s)	52, 173
AsiGI	ACCGGT	1 cut(s)	367
AspS9I	GGNCC	3 cut(s)	350, 439, 536
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	3 cut(s)	350, 439, 536
BamHI	GGATCC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	501
BccI	CCATC	4 cut(s)	52, 503, 548, 572
BclI	TGATCA	1 cut(s)	262
BglII	AGATCT	2 cut(s)	231, 257
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme18I	GGWCC	3 cut(s)	350, 439, 536
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	350, 439, 536
BmiI	GGNNCC	4 cut(s)	26, 42, 440, 515
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	6 cut(s)	352, 367, 427, 528, 538, 564
BsaXI	ACNNNNNCTCC	6 cut(s)	327, 357, 375, 405, 427, 457
Bsc4I	CCNNNNNNNGG	3 cut(s)	545, 571, 598
Bse118I	RCCGGY	5 cut(s)	21, 27, 329, 367, 582
Bse1I	ACTGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	3 cut(s)	154, 514, 559
BseLI	CCNNNNNNNGG	3 cut(s)	545, 571, 598
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	73
Bsh1285I	CGRYCG	2 cut(s)	368, 372
BshFI	GGCC	3 cut(s)	21, 417, 582
BshNI	GGYRCC	1 cut(s)	24
BshTI	ACCGGT	1 cut(s)	367
BsiEI	CGRYCG	2 cut(s)	368, 372
BsiHKAI	GWGCWC	1 cut(s)	501
BsiWI	CGTACG	1 cut(s)	391
BslFI	GGGAC	2 cut(s)	90, 411
BslI	CCNNNNNNNGG	3 cut(s)	545, 571, 598
BsmFI	GGGAC	2 cut(s)	90, 411
BsnI	GGCC	3 cut(s)	21, 417, 582
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
BspACI	CCGC	4 cut(s)	143, 333, 361, 549
BspANI	GGCC	3 cut(s)	21, 417, 582
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	26, 42, 440, 515
BspPI	GGATC	5 cut(s)	419, 508, 520, 521, 590
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	24
BsrFI	RCCGGY	5 cut(s)	21, 27, 329, 367, 582
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	5 cut(s)	21, 27, 329, 367, 582
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
Bst6I	CTCTTC	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	154, 514, 559
BstKTI	GATC	8 cut(s)	234, 260, 265, 427, 475, 516, 528, 598
BstMBI	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
BstMCI	CGRYCG	2 cut(s)	368, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstX2I	RGATCY	3 cut(s)	231, 257, 513
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	3 cut(s)	231, 257, 513
BsuRI	GGCC	3 cut(s)	21, 417, 582
BtgI	CCRYGG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	154, 514, 559
Cac8I	GCNNGC	1 cut(s)	497
Cfr10I	RCCGGY	5 cut(s)	21, 27, 329, 367, 582
Cfr13I	GGNCC	3 cut(s)	350, 439, 536
Csp6I	GTAC	1 cut(s)	392
CspAI	ACCGGT	1 cut(s)	367
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	8 cut(s)	233, 259, 264, 426, 474, 515, 527, 597
DpnII	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	2 cut(s)	415, 580
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
EciI	GGCGGA	2 cut(s)	158, 348
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	3 cut(s)	350, 439, 536
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	501
FaiI	YATR	6 cut(s)	212, 214, 216, 288, 294, 488
FaqI	GGGAC	2 cut(s)	90, 411
FauI	CCCGC	1 cut(s)	542
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	3 cut(s)	161, 521, 566
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	21, 417, 582
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	3 cut(s)	121, 127, 387
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	126, 262, 508, 525
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	152, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
LmnI	GCTCC	3 cut(s)	46, 287, 504
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	8 cut(s)	233, 259, 264, 426, 474, 515, 527, 597
MboI	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
MboII	GAAGA	3 cut(s)	228, 231, 234
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	3 cut(s)	231, 257, 513
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	3 cut(s)	52, 168, 173
MlyI	GAGTC	3 cut(s)	115, 121, 396
MmeI	TCCRAC	1 cut(s)	357
MseI	TTAA	1 cut(s)	604
MunI	CAATTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
NlaIV	GGNNCC	4 cut(s)	26, 42, 440, 515
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
Pfl23II	CGTACG	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	3 cut(s)	115, 121, 395
PpsI	GAGTC	3 cut(s)	115, 121, 395
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	73
PspLI	CGTACG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	26, 42, 440, 515
PspPI	GGNCC	3 cut(s)	350, 439, 536
PsuI	RGATCY	3 cut(s)	231, 257, 513
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	604
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	8 cut(s)	231, 257, 262, 424, 472, 513, 525, 595
Sau96I	GGNCC	3 cut(s)	350, 439, 536
SchI	GAGTC	3 cut(s)	115, 121, 396
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	5 cut(s)	111, 139, 323, 403, 501
SfaNI	GCATC	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	3 cut(s)	350, 439, 536
Sse9I	AATT	3 cut(s)	52, 168, 173
SsiI	CCGC	4 cut(s)	143, 333, 361, 549
SstI	GAGCTC	1 cut(s)	501
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	33, 372
TasI	AATT	3 cut(s)	52, 168, 173
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	604
Tru9I	TTAA	1 cut(s)	604
TspDTI	ATGAA	2 cut(s)	212, 231
TspGWI	ACGGA	3 cut(s)	396, 431, 506
VpaK11BI	GGWCC	3 cut(s)	350, 439, 536
XapI	RAATTY	2 cut(s)	52, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.