Rroxscaffold_4G00327150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003076
Physical Location & Seq
Reverse (-)
59644799 .. 59663032
18234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327150.1

Sequence Viewer

Length: 666 bp
ATGGAGAAGGAGAAAAAGACGATAGAGGGGATAGATAGAATTCATTCCTTCACCTCCTCCATCAAAACTCCAACTCTTTCACTTCCAAATCCCAAATCCCACGCAGCAAATTTGATAAAATCATCAAGAGCCCATGAGTTTTCTCAAGGATTTGGCTCTAAAGGAGGCTCTTTTCGCTCTTGGAGGAAGAGATTTTTTCACTTGGAGAGTTGGAATTGGATTTGCAGCAAAGGAGTTAAGACAGCTCCACAACGTCTTCTTATTCAATATGGGCCACTTGGGCCTTCTTGTGGGCACGGGGAGGGTCCACTAACACTTGTTCACTCAACGGTGATGATGGCTTGGGCTTGCTCATTCCTTGGGCTAAGCACTAAGTGGGCCTGTTACTCAGTTGTACTTCACCAAGGAAGATTCGACTCCAAAGAGGGTTATCAGAAGTTCTTTATGGGGAGGCTTAAAAGGGTCAAAGATCGGTTCAGAGAGATGACACAGTGGTTTGAACAAGTAATCAGATATGCAGTTGACATGCCACAGAATCAAGTCGAAGTTTATAGTTTGCAGCTCCGAGATGTTGTCTCATCGACTCTTGATCTTTCAATTTCAGCCACAGAAACCACTTTTAGTTGGTTGGCAGTCCCAGCAGGGTTACCTAGAACACAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.11

Weight (kDa)

9.78

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 39, 109
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 266, 500, 597
AluBI AGCT 2 cut(s) 245, 562
AluI AGCT 2 cut(s) 245, 562
Alw26I GTCTC 1 cut(s) 580
AoxI GGCC 3 cut(s) 272, 281, 378
ApeKI GCWGC 3 cut(s) 104, 225, 559
ApoI RAATTY 2 cut(s) 39, 109
Asp700I GAANNNNTTC 1 cut(s) 43
AspS9I GGNCC 4 cut(s) 272, 281, 305, 378
AsuHPI GGTGA 3 cut(s) 43, 343, 392
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 3 cut(s) 116, 237, 571
BccI CCATC 2 cut(s) 68, 331
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 280
BisI GCNGC 3 cut(s) 105, 226, 560
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 3 cut(s) 106, 227, 561
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 272, 281, 305, 378
BmiI GGNNCC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 358, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 358, 403
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 3 cut(s) 116, 237, 571
BseYI CCCAGC 1 cut(s) 637
BshFI GGCC 3 cut(s) 274, 283, 380
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 3 cut(s) 274, 283, 380
Bsp1286I GDGCHC 2 cut(s) 133, 297
Bsp143I GATC 2 cut(s) 469, 589
Bsp1720I GCTNAGC 1 cut(s) 365
BspANI GGCC 3 cut(s) 274, 283, 380
BspCNI CTCAG 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 358, 403
BssMI GATC 2 cut(s) 469, 589
BssT1I CCWWGG 2 cut(s) 358, 403
Bst4CI ACNGT 2 cut(s) 331, 492
Bst6I CTCTTC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 365, 372, 388
BstEII GGTNACC 1 cut(s) 645
BstKTI GATC 2 cut(s) 472, 592
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 2 cut(s) 469, 589
BstMWI GCNNNNNNNGC 3 cut(s) 174, 280, 638
BstNSI RCATGY 1 cut(s) 529
BstPI GGTNACC 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 116, 237, 571
BstV2I GAAGAC 1 cut(s) 248
BsuRI GGCC 3 cut(s) 274, 283, 380
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 349
Cfr13I GGNCC 4 cut(s) 272, 281, 305, 378
Csp6I GTAC 1 cut(s) 395
CviAII CATG 2 cut(s) 134, 526
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 3 cut(s) 365, 372, 388
DpnI GATC 2 cut(s) 471, 591
DpnII GATC 2 cut(s) 469, 589
DraIII CACNNNGTG 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 358, 403
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 645
EcoO65I GGTNACC 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 358, 403
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 358, 403
FaeI CATG 2 cut(s) 137, 529
FaiI YATR 6 cut(s) 135, 270, 446, 516, 527, 552
FaqI GGGAC 1 cut(s) 620
FatI CATG 2 cut(s) 133, 525
Fnu4HI GCNGC 3 cut(s) 105, 226, 560
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 105, 226, 560
FspBI CTAG 1 cut(s) 651
GluI GCNGC 3 cut(s) 105, 226, 560
GsaI CCCAGC 1 cut(s) 641
HaeIII GGCC 3 cut(s) 274, 283, 380
Hin1II CATG 2 cut(s) 137, 529
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 4 cut(s) 411, 416, 535, 583
HphI GGTGA 3 cut(s) 43, 343, 392
Hpy166II GTNNAC 3 cut(s) 308, 322, 523
Hpy188I TCNGA 4 cut(s) 435, 479, 512, 566
Hpy188III TCNNGA 2 cut(s) 126, 587
Hpy8I GTNNAC 3 cut(s) 308, 322, 523
HpyAV CCTTC 2 cut(s) 58, 294
HpyCH4III ACNGT 2 cut(s) 331, 492
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 225, 518, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 280, 638
HpyF3I CTNAG 3 cut(s) 365, 372, 388
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 137, 529
Kzo9I GATC 2 cut(s) 469, 589
LmnI GCTCC 2 cut(s) 250, 567
LpnPI CCDG 3 cut(s) 394, 627, 651
Lsp1109I GCAGC 3 cut(s) 116, 237, 571
MaeI CTAG 1 cut(s) 651
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 383, 645
MalI GATC 2 cut(s) 471, 591
MboI GATC 2 cut(s) 469, 589
MboII GAAGA 3 cut(s) 199, 248, 420
MhlI GDGCHC 2 cut(s) 133, 297
MluCI AATT 4 cut(s) 39, 109, 214, 597
MlyI GAGTC 2 cut(s) 410, 577
MmeI TCCRAC 2 cut(s) 95, 191
MnlI CCTC 8 cut(s) 19, 64, 67, 158, 177, 295, 418, 444
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 237, 456
MwoI GCNNNNNNNGC 3 cut(s) 174, 280, 638
NdeII GATC 2 cut(s) 469, 589
NlaIII CATG 2 cut(s) 137, 529
NlaIV GGNNCC 1 cut(s) 306
NspI RCATGY 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 411, 535
PkrI GCNGC 3 cut(s) 106, 227, 561
PleI GAGTC 2 cut(s) 410, 577
PpsI GAGTC 2 cut(s) 410, 577
PspEI GGTNACC 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 4 cut(s) 272, 281, 305, 378
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SaqAI TTAA 2 cut(s) 237, 456
SatI GCNGC 3 cut(s) 105, 226, 560
Sau3AI GATC 2 cut(s) 469, 589
Sau96I GGNCC 4 cut(s) 272, 281, 305, 378
SchI GAGTC 2 cut(s) 410, 577
SduI GDGCHC 2 cut(s) 133, 297
SetI ASST 6 cut(s) 56, 247, 256, 564, 652, 664
SfiI GGCCNNNNNGGCC 1 cut(s) 280
SinI GGWCC 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 4 cut(s) 39, 109, 214, 597
SspMI CTAG 1 cut(s) 651
StyI CCWWGG 2 cut(s) 358, 403
TaaI ACNGT 2 cut(s) 331, 492
TaiI ACGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 414, 543, 581
TasI AATT 4 cut(s) 39, 109, 214, 597
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 2 cut(s) 411, 535
Tru1I TTAA 2 cut(s) 237, 456
Tru9I TTAA 2 cut(s) 237, 456
TscAI CASTG 1 cut(s) 497
TseI GCWGC 3 cut(s) 104, 225, 559
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 2 cut(s) 39, 109
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.