Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003076

Physical Location & Seq

Genomic Coordinates Reverse (-)

60270830 .. 60271207

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG414600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCAGCGAATGGTCAGAGTTGGATGGAGGAGCCGTATGGGAATGTGGTGGAAGGGGTGGCTGGATCGATCTGGTTTGCAGGGTCTGTGGGTGGTTGGCAAAGTGGGGTTGCTTTGATCTATGGTGGTTATGCTGGGCGGACTCCAATCGGATGGGATCTAACCTCCGATCTGGTCTGGTCCGGTGTCTGGTTGGGGATGGGAAATTCTAGTTTAGGGGTGATGGTTGGTTCGATCCTGATCTGGCTTAAGGGGGATGGGTGTGGCGGTAGTGTGCTTGTCCGTGACTCCAATGTGGCGACGGCGGTCTGGTGGGATAGGTGGTGCTACGACAATGGCCTCCTGCTCTCTTGGATGGATCTTGGGCTTGTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.28

Weight (kDa)

4.05

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003076)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155381 RchiOBHm_Chr5g0058981 RchiOBHm_Chr5g0076361 RchiOBHm_Chr5g0082591 RchiOBHm_Chr7g0187121
rosa_laevigata	RLG00000002482 RLG00000013344 RLG00000020042 RLG00000022826 RLG00000031491 RLG00000033579 RLG00000037047
rosa_roxburghii	Rroxscaffold_1G00061570 Rroxscaffold_4G00301770 Rroxscaffold_4G00327150 Rroxscaffold_5G00367140
rosa_rugosa	Rorug02G0401400 Rorug05G0384900 Rorug07G0201200
rosa_samantha	Rh2AG392300 Rh2BG247500 Rh2BG399800 Rh2DG414600 Rh2DG504800 Rh3AG072600 Rh3BG074600 Rh3CG074200 Rh4BG374200 Rh4CG310700 Rh4CG388200 Rh5AG329000 Rh5BG326100 Rh5BG396600 Rh5CG420400 Rh7AG176200 Rh7BG284900 Rh7CG312600
rosa_wichuraiana	Rw7G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	139, 267, 305
AclWI	GGATC	4 cut(s)	73, 165, 229, 366
AcsI	RAATTY	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	248
AlwI	GGATC	4 cut(s)	73, 165, 229, 366
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	6 cut(s)	19, 147, 193, 217, 251, 349
BceAI	ACGGC	2 cut(s)	19, 318
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	68
BseGI	GGATG	5 cut(s)	30, 158, 204, 262, 360
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
BspACI	CCGC	3 cut(s)	139, 267, 305
BspANI	GGCC	1 cut(s)	339
BspDI	ATCGAT	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	4 cut(s)	73, 165, 229, 366
BspTI	CTTAAG	1 cut(s)	248
BssMI	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
BstAFI	CTTAAG	1 cut(s)	248
BstF5I	GGATG	5 cut(s)	30, 158, 204, 262, 360
BstKTI	GATC	8 cut(s)	68, 72, 120, 160, 172, 237, 243, 361
BstMBI	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
BstPAI	GACNNNNGTC	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	157, 358
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	2 cut(s)	157, 358
Bsu15I	ATCGAT	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	68
BtsCI	GGATG	5 cut(s)	30, 158, 204, 262, 360
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	180
ClaI	ATCGAT	1 cut(s)	68
CviAII	CATG	1 cut(s)	375
CviJI	RGCY	5 cut(s)	34, 62, 247, 339, 367
CviKI_1	RGCY	5 cut(s)	34, 62, 247, 339, 367
DpnI	GATC	8 cut(s)	67, 71, 119, 159, 171, 236, 242, 360
DpnII	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
EciI	GGCGGA	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	180
FaeI	CATG	1 cut(s)	378
FaiI	YATR	4 cut(s)	39, 123, 132, 376
FatI	CATG	1 cut(s)	374
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	5 cut(s)	37, 165, 211, 269, 367
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	1 cut(s)	378
HinfI	GANTC	2 cut(s)	142, 287
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	18, 152, 169
Hpy188III	TCNNGA	2 cut(s)	238, 375
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	378
Kzo9I	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	8 cut(s)	67, 71, 119, 159, 171, 236, 242, 360
MboI	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
MflI	RGATCY	2 cut(s)	157, 358
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	2 cut(s)	136, 281
MnlI	CCTC	3 cut(s)	22, 175, 350
MseI	TTAA	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	183
NdeII	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
NlaIII	CATG	1 cut(s)	378
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	284
PagI	TCATGA	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	136, 281
PpsI	GAGTC	2 cut(s)	136, 281
PshAI	GACNNNNGTC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	157, 358
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	8 cut(s)	65, 69, 117, 157, 169, 234, 240, 358
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	2 cut(s)	136, 281
SetI	ASST	2 cut(s)	167, 323
SinI	GGWCC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	139, 267, 305
SspMI	CTAG	1 cut(s)	210
TaqI	TCGA	2 cut(s)	68, 233
TasI	AATT	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	205
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.