Rh7AG176200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003076
Physical Location & Seq
Forward (+)
15467445 .. 15467717
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG176200.1

Sequence Viewer

Length: 273 bp
ATGAGGGTTTGCCAGGTTTTTGACCCGCGGAGGCTTAGTAGGAGGATCGGAATGGCAGCGACTGGTCAGAGTTGGATGGAGGAGCCGTACGGGGACGTGGTGGAGGGGGTGGCTGGACTGATCTGGTTTGGAGGGTCTGTGGGTGGTTGGCGGAGTGGGGTTGCTTTAATCTCTAGTGGTTATGCTGGGCGGGCTCTGATCGGATGGGATCTGTCCTCCAATCCTGTCTGGTCCGATGGTTGGCAGGGATGGGAAACTCCAGTTCAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.76

Weight (kDa)

5.14

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AciI CCGC 4 cut(s) 26, 28, 151, 190
AclWI GGATC 2 cut(s) 53, 216
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 240, 266
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 12
AlwI GGATC 2 cut(s) 53, 216
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 231
AvaII GGWCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 68
BccI CCATC 4 cut(s) 70, 198, 230, 243
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 6 cut(s) 22, 52, 71, 101, 123, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 266
Bse1I ACTGG 2 cut(s) 67, 260
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 3 cut(s) 81, 209, 254
BseLI CCNNNNNNNGG 2 cut(s) 240, 266
BseNI ACTGG 2 cut(s) 67, 260
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 28
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 240, 266
BsmFI GGGAC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 4 cut(s) 45, 120, 198, 208
BspACI CCGC 4 cut(s) 26, 28, 151, 190
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 53, 216
BsrI ACTGG 2 cut(s) 67, 260
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 4 cut(s) 45, 120, 198, 208
Bst2UI CCWGG 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 3 cut(s) 81, 209, 254
BstFNI CGCG 1 cut(s) 28
BstKTI GATC 4 cut(s) 48, 123, 201, 211
BstMBI GATC 4 cut(s) 45, 120, 198, 208
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 26
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 81, 209, 254
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 231
Cfr42I CCGCGG 1 cut(s) 29
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 4 cut(s) 34, 85, 113, 194
CviKI_1 RGCY 4 cut(s) 34, 85, 113, 194
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 35
DpnI GATC 4 cut(s) 47, 122, 200, 210
DpnII GATC 4 cut(s) 45, 120, 198, 208
EciI GGCGGA 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 196
FaiI YATR 1 cut(s) 183
FaqI GGGAC 1 cut(s) 107
FauI CCCGC 2 cut(s) 33, 183
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 3 cut(s) 88, 216, 261
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 243
Hpy188I TCNGA 5 cut(s) 50, 69, 198, 203, 235
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 96
KspI CCGCGG 1 cut(s) 29
Kzo9I GATC 4 cut(s) 45, 120, 198, 208
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 9 cut(s) 26, 48, 99, 109, 171, 214, 230, 237, 251
Lsp1109I GCAGC 1 cut(s) 68
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 96
MalI GATC 4 cut(s) 47, 122, 200, 210
MboI GATC 4 cut(s) 45, 120, 198, 208
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 6 cut(s) 24, 36, 73, 97, 125, 226
MseI TTAA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 4 cut(s) 45, 120, 198, 208
NlaIV GGNNCC 1 cut(s) 84
Pfl23II CGTACG 1 cut(s) 87
PkrI GCNGC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 12
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SacII CCGCGG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 45, 120, 198, 208
Sau96I GGNCC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 196
SetI ASST 2 cut(s) 18, 99
Sfr303I CCGCGG 1 cut(s) 29
SgrBI CCGCGG 1 cut(s) 29
SinI GGWCC 1 cut(s) 231
SsiI CCGC 4 cut(s) 26, 28, 151, 190
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 99
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseI GCWGC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 231
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.