Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003076

Physical Location & Seq

Genomic Coordinates Reverse (-)

87852074 .. 87855242

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTGGGATTTCTTGGGTTATGGTTTGAGTTAGTGGGTGGTGGAGGAGGCGGAGGAAGTGGAGGAGTTGGTACCGGTGCTGTGATTTGGGTGGAATTCTTGAATTTCGGTTTGACTGAGAGAGTGAGAGTGAATTTAGGCGTTTGCGGTTGTGAAATTGGGTTTGTCATCAACAAGGAGAGGGAAGACGAAGTGTGGAATTACGTTGAAGAAAGCAGGAGAGCTGCAGCTCAGGTGTATGTGATTAGTGGGACTGTTGCTCAGTGGTACTTCACCAAGGAATACTCGACTCCAAAGCAGGTTATTAGAAGTTCCTTAAGTAAGAAAAAGAGGAGGGCGAATCAGTTTGTGTTTCTTTTGAAAAAGGTTTCACCTGCTACTACTATTAATGCTGCAACTGATTTATTTGTTGTGATAGGTGTGCAAGGGTCTATTAGCAGAATACTAGAAGAGATCAGAAATAGGAACTTCTCCTTCTTGCCACCTGTCCTGTCTTTCGATGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

170

Amino Acids

18.66

Weight (kDa)

9.39

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003076)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155381 RchiOBHm_Chr5g0058981 RchiOBHm_Chr5g0076361 RchiOBHm_Chr5g0082591 RchiOBHm_Chr7g0187121
rosa_laevigata	RLG00000002482 RLG00000013344 RLG00000020042 RLG00000022826 RLG00000031491 RLG00000033579 RLG00000037047
rosa_roxburghii	Rroxscaffold_1G00061570 Rroxscaffold_4G00301770 Rroxscaffold_4G00327150 Rroxscaffold_5G00367140
rosa_rugosa	Rorug02G0401400 Rorug05G0384900 Rorug07G0201200
rosa_samantha	Rh2AG392300 Rh2BG247500 Rh2BG399800 Rh2DG414600 Rh2DG504800 Rh3AG072600 Rh3BG074600 Rh3CG074200 Rh4BG374200 Rh4CG310700 Rh4CG388200 Rh5AG329000 Rh5BG326100 Rh5BG396600 Rh5CG420400 Rh7AG176200 Rh7BG284900 Rh7CG312600
rosa_wichuraiana	Rw7G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	382
Acc36I	ACCTGC	2 cut(s)	289, 382
Acc65I	GGTACC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	2 cut(s)	51, 147
AcsI	RAATTY	3 cut(s)	95, 103, 133
AfaI	GTAC	2 cut(s)	73, 269
AflII	CTTAAG	1 cut(s)	316
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	103, 209, 361
AluBI	AGCT	2 cut(s)	224, 230
AluI	AGCT	2 cut(s)	224, 230
ApeKI	GCWGC	3 cut(s)	224, 227, 392
ApoI	RAATTY	3 cut(s)	95, 103, 133
AseI	ATTAAT	1 cut(s)	387
AsiGI	ACCGGT	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	265, 363
BanI	GGYRCC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	211, 239, 379
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	316
BfuAI	ACCTGC	2 cut(s)	289, 382
BisI	GCNGC	3 cut(s)	225, 228, 393
BlsI	GCNGC	3 cut(s)	226, 229, 394
BmiI	GGNNCC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	108, 245, 275
BseRI	GAGGAG	3 cut(s)	60, 78, 346
BseXI	GCAGC	3 cut(s)	211, 239, 379
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	51, 147
BspCNI	CTCAG	3 cut(s)	109, 244, 274
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	2 cut(s)	289, 382
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	117, 231, 261
BstKTI	GATC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	211, 239, 379
BstV2I	GAAGAC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	2 cut(s)	289, 382
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	72, 268
CspAI	ACCGGT	1 cut(s)	74
CviJI	RGCY	2 cut(s)	224, 230
CviKI_1	RGCY	2 cut(s)	224, 230
CviQI	GTAC	2 cut(s)	72, 268
DdeI	CTNAG	3 cut(s)	117, 231, 261
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	2 cut(s)	22, 240
FaqI	GGGAC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	225, 228, 393
Fsp4HI	GCNGC	3 cut(s)	225, 228, 393
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	3 cut(s)	225, 228, 393
HapII	CCGG	1 cut(s)	75
HinfI	GANTC	2 cut(s)	289, 340
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	265, 363
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	227, 395, 424
HpyF3I	CTNAG	3 cut(s)	117, 231, 261
HpySE526I	ACGT	1 cut(s)	204
KpnI	GGTACC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	453
LpnPI	CCDG	7 cut(s)	88, 202, 218, 284, 387, 498, 503
Lsp1109I	GCAGC	3 cut(s)	211, 239, 379
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	3 cut(s)	197, 221, 461
MluCI	AATT	5 cut(s)	95, 103, 133, 156, 199
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	38, 41, 47, 56, 174, 324, 327
MseI	TTAA	2 cut(s)	317, 387
MspCI	CTTAAG	1 cut(s)	316
MspI	CCGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	453
NlaIV	GGNNCC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	226, 229, 394
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	73, 269
RsaNI	GTAC	2 cut(s)	72, 268
SaqAI	TTAA	2 cut(s)	317, 387
SatI	GCNGC	3 cut(s)	225, 228, 393
Sau3AI	GATC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	283
SetI	ASST	9 cut(s)	207, 226, 232, 237, 303, 369, 376, 421, 487
SfcI	CTRYAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	5 cut(s)	95, 103, 133, 156, 199
SsiI	CCGC	2 cut(s)	51, 147
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	287, 498
TasI	AATT	5 cut(s)	95, 103, 133, 156, 199
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	317, 387
Tru9I	TTAA	2 cut(s)	317, 387
TscAI	CASTG	1 cut(s)	269
TseI	GCWGC	3 cut(s)	224, 227, 392
TspRI	CASTG	1 cut(s)	269
Vha464I	CTTAAG	1 cut(s)	316
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	3 cut(s)	95, 103, 133
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.