RLG00000013344

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003076
Physical Location & Seq
Reverse (-)
30114426 .. 30117090
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013344

Sequence Viewer

Length: 345 bp
ATGGACAGGGTTTGCGATTATCATATTGGGTTTGTCATCAACAAGGAGAAGGAGGGTGAGTTTTGGAGTTTTATTAAGGAGAGCAGGACAGCTGCAGTTGCAACTTGCACCACAATCCAACCTGGCACAAAAAACAAAAGGACTGGTTGGATATCTCTGAGAGGTAGACTTGGGTTCGTTTCGGAAGAGCTGTGCGCCAAGATTGTGATCAAGTTTACGAGACAGGCTTCGGGAGCAGAAGCAGTATTTAAAAGGTTTTTCTTGCATCTTTGGCATTGGTTGGGTTGTAGTTTGAAAAAAGAGGACCCAAATAATGAAGCCACACTGAAACTGCTAGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

9.47

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 92, 190
AluI AGCT 2 cut(s) 92, 190
Alw26I GTCTC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 274
BmtI GCTAGC 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse1I ACTGG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 206
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 97
BspOI GCTAGC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 148
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 3 cut(s) 98, 233, 271
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 304
CviJI RGCY 4 cut(s) 92, 190, 227, 320
CviKI_1 RGCY 4 cut(s) 92, 190, 227, 320
DdeI CTNAG 1 cut(s) 158
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
DraI TTTAAA 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 121
EcoRV GATATC 1 cut(s) 153
FaiI YATR 1 cut(s) 24
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 197
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 167, 216
Hpy188I TCNGA 2 cut(s) 159, 184
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 167, 216
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 95, 101, 108, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 233, 271
HpyF3I CTNAG 1 cut(s) 158
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 70, 108, 129, 135, 209
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 335
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 128, 142
MnlI CCTC 3 cut(s) 46, 155, 295
MseI TTAA 2 cut(s) 75, 249
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 98, 233, 271
NdeII GATC 1 cut(s) 207
NheI GCTAGC 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 304
PspPPI RGGWCCY 1 cut(s) 304
PstI CTGCAG 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 75, 249
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 123
SetI ASST 5 cut(s) 94, 124, 166, 192, 257
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 304
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 121
Tru1I TTAA 2 cut(s) 75, 249
Tru9I TTAA 2 cut(s) 75, 249
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 166
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.