Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

4205132 .. 4205440

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCTGCTCAATGCTAATCCCCATTTGTGTTTCAGCTGCCTCAACATCCGACGACATTGCACCTGCAATTTCACTCACAGAGAATGCATCAAAGCACTTCAATAAGATGAGATCCAAACATAATGAGGATCTATGCCTGGGAATTGGTGTTAAACAGGGTGGATATTCGGGCATGTTGTATACCATGGACTTCTATAGTAAAGAAAATGCAAGACCAGATGATTCAACCATTGAATATAATGGTTTTAAGATAGGTCAGCCTTCATATTTTCATTCTCTTAGTCAAGTGAGCTTGGACTATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

5.42

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	182
AclWI	GGATC	2 cut(s)	108, 138
AgsI	TTSAA	3 cut(s)	103, 228, 236
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	38, 294
AluI	AGCT	2 cut(s)	38, 294
AlwI	GGATC	2 cut(s)	108, 138
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	196
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	139, 186
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	139, 186
BseGI	GGATG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	113, 130
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	1 cut(s)	5
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	108, 138
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	139, 186
BssMI	GATC	2 cut(s)	113, 130
BssNAI	GTATAC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	116, 133
BstMBI	GATC	2 cut(s)	113, 130
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	113, 130
BstYI	RGATCY	2 cut(s)	113, 130
BstZ17I	GTATAC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	7
CviAII	CATG	2 cut(s)	175, 187
CviJI	RGCY	4 cut(s)	5, 38, 262, 294
CviKI_1	RGCY	4 cut(s)	5, 38, 262, 294
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	115, 132
DpnII	GATC	2 cut(s)	113, 130
Eco130I	CCWWGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	178, 190
FaiI	YATR	8 cut(s)	123, 136, 176, 183, 188, 198, 240, 268
FatI	CATG	2 cut(s)	174, 186
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	178, 190
HinfI	GANTC	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	62, 68, 89, 212
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	178, 190
Kzo9I	GATC	2 cut(s)	113, 130
LpnPI	CCDG	6 cut(s)	19, 78, 125, 143, 152, 231
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	98
MalI	GATC	2 cut(s)	115, 132
MboI	GATC	2 cut(s)	113, 130
MflI	RGATCY	2 cut(s)	113, 130
MluCI	AATT	2 cut(s)	69, 144
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	52, 121
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	2 cut(s)	153, 249
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	113, 130
NlaIII	CATG	2 cut(s)	178, 190
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	113, 130
PvuII	CAGCTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	153, 249
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	113, 130
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	4 cut(s)	40, 67, 259, 296
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	69, 144
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	186
TasI	AATT	2 cut(s)	69, 144
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	153, 249
Tru9I	TTAA	2 cut(s)	153, 249
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	255, 263
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.