Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

44525279 .. 44540858

Gene Structure 15580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG334900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTCTACGACATTTGCAGCAACCTCAGCCTCAATGGCATATTACTATTCTAAGTGCTGAGTCACCTATTGGTACTGCTTCGCAAGGATCTGAAGCTGGACCACCTCCTTATGCTTCCGCATTGCCCACTACCATCACAGTGTTGGGTGCACTTTTCTTAGCTGAGCAGACCCAGCAACAAGTCATCGACTTCCATGTGATCGTAGATGGTAGGCTTTTGCTGCACAGCCTTCTTAGACAAAACAGTTGCATGAGACCTACGTTAGGCTACTCTTGGCACTCCTTCTATCAGATTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGCTTTGAGTTGTTGGCTTTGGTTGCATGCCCTGAAAGGGAAGGGAAACGGGTTCTGGTTCCGGGCCTACTGCCAGGAATTGGTTCTGGTTATGATGATCTCTGCATATGGGAGGTGATGCTCGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTATAGCTGTGGAGGACAAATTGCAAAAAAGGGCTGTGATGGCCAGTGACTTTGCTATTCCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCATATGGCTGATGCTGTTGCTTCCAAGAATACTTCAACCATGACAAAGTCCTCTTCATCATCTCAGCCCAATTGTGGATCACAAATCTCTAAAGAGCTGGTCAAGGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019216 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034204 GO:0040007 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045332 GO:0048193 GO:0048194 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0080090 GO:0097035 GO:0098791 GO:1905038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

250

Amino Acids

27.76

Weight (kDa)

7.69

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	184 - 225	5.8e-16	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	425
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	97, 724
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	5 cut(s)	266, 382, 425, 582, 713
AgsI	TTSAA	1 cut(s)	675
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	6 cut(s)	98, 164, 310, 348, 521, 736
AluI	AGCT	6 cut(s)	98, 164, 310, 348, 521, 736
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	9, 250, 589
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	97, 724
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	409, 555
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	19, 223
Asp700I	GAANNNNTTC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	101, 409
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	57, 472
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	31, 210
BccI	CCATC	4 cut(s)	143, 203, 481, 547
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	9, 250, 589
BfmI	CTRYAG	1 cut(s)	516
BglI	GCCNNNNNGGC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	20, 224
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	21, 225
Bme1390I	CCNGG	2 cut(s)	408, 420
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	101, 409
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	408, 420
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	453, 640
BmuI	ACTGGG	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 382, 425, 582, 713
Bse1I	ACTGG	2 cut(s)	558, 577
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	610
BseLI	CCNNNNNNNGG	5 cut(s)	266, 382, 425, 582, 713
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	5 cut(s)	41, 51, 156, 335, 716
BseNI	ACTGG	2 cut(s)	558, 577
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	31, 210
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	411, 557
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	5 cut(s)	266, 382, 425, 582, 713
BsmAI	GTCTC	3 cut(s)	9, 250, 589
BsnI	GGCC	2 cut(s)	411, 557
Bso31I	GGTCTC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	5 cut(s)	89, 201, 442, 501, 716
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	411, 557
BspCNI	CTCAG	5 cut(s)	40, 52, 157, 336, 715
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	97, 724
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	558, 577
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	5 cut(s)	89, 201, 442, 501, 716
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	142, 248
Bst6I	CTCTTC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	8 cut(s)	27, 53, 60, 160, 165, 236, 344, 702
BstDSI	CCRYGG	1 cut(s)	610
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstKTI	GATC	5 cut(s)	92, 204, 445, 504, 719
BstMAI	GTCTC	3 cut(s)	9, 250, 589
BstMBI	GATC	5 cut(s)	89, 201, 442, 501, 716
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 37, 175, 223, 368, 554, 644
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	406, 418
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	31, 210
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	411, 557
BtgI	CCRYGG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	147, 565
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	101, 409
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	6 cut(s)	197, 253, 372, 505, 611, 679
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	8 cut(s)	27, 53, 60, 160, 165, 236, 344, 702
DpnI	GATC	5 cut(s)	91, 203, 444, 503, 718
DpnII	GATC	5 cut(s)	89, 201, 442, 501, 716
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	6 cut(s)	200, 256, 375, 508, 614, 682
FatI	CATG	6 cut(s)	196, 252, 371, 504, 610, 678
FauNDI	CATATG	2 cut(s)	452, 642
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	20, 224
Fsp4HI	GCNGC	2 cut(s)	20, 224
GluI	GCNGC	2 cut(s)	20, 224
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	411, 557
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	6 cut(s)	200, 256, 375, 508, 614, 682
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	2 cut(s)	57, 472
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	4 cut(s)	94, 294, 327, 345
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	242, 295, 380
HpyCH4III	ACNGT	2 cut(s)	142, 248
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	7 cut(s)	19, 152, 226, 252, 371, 450, 538
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 37, 175, 223, 368, 554, 644
HpyF3I	CTNAG	8 cut(s)	27, 53, 60, 160, 165, 236, 344, 702
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	6 cut(s)	200, 256, 375, 508, 614, 682
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	89, 201, 442, 501, 716
Lsp1109I	GCAGC	2 cut(s)	31, 210
LweI	GCATC	2 cut(s)	453, 640
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	63, 560
MalI	GATC	5 cut(s)	91, 203, 444, 503, 718
MboI	GATC	5 cut(s)	89, 201, 442, 501, 716
MboII	GAAGA	2 cut(s)	496, 684
MfeI	CAATTG	1 cut(s)	709
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	3 cut(s)	423, 533, 709
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	36, 42, 117, 451, 520, 700
Mox20I	TGGCCA	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	557
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	408, 420
MunI	CAATTG	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	7 cut(s)	28, 37, 175, 223, 368, 554, 644
NciI	CCSGG	1 cut(s)	408
NcoI	CCATGG	1 cut(s)	610
NdeI	CATATG	2 cut(s)	452, 642
NdeII	GATC	5 cut(s)	89, 201, 442, 501, 716
NlaIII	CATG	6 cut(s)	200, 256, 375, 508, 614, 682
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	63, 560
NspI	RCATGY	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	21, 225
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	101, 409
PspXI	VCTCGAGB	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	685
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	2 cut(s)	20, 224
Sau3AI	GATC	5 cut(s)	89, 201, 442, 501, 716
Sau96I	GGNCC	2 cut(s)	101, 409
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	408, 420
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	453, 640
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	311, 467
SmoI	CTYRAG	2 cut(s)	311, 467
SphI	GCATGC	1 cut(s)	375
Sse9I	AATT	3 cut(s)	423, 533, 709
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	406, 418
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	142, 248
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	189, 468
TasI	AATT	3 cut(s)	423, 533, 709
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	2 cut(s)	147, 565
TseFI	GTSAC	2 cut(s)	63, 560
TseI	GCWGC	2 cut(s)	19, 223
Tsp45I	GTSAC	2 cut(s)	63, 560
TspDTI	ATGAA	1 cut(s)	684
TspRI	CASTG	2 cut(s)	147, 565
Tth111I	GACNNNGTC	1 cut(s)	685
Van91I	CCANNNNNTGG	1 cut(s)	425
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	264
XceI	RCATGY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.