Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

42668862 .. 42687020

Gene Structure 18159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGTGGAGATATGAAGACCCAAATAGTGCGGTTTCCTCATTTTCGATGCTTCTTGGAGATGCTCCTCATCTTGATGCAAAATCATCTATCGTGGCTGATAGGGAGGTGATGCTCGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGTGTGGAGGACAAATTGCAAAAAGGTCGATGTCGCCGCTTCCAAGAATACTTCGACCATGACAAAGTCCTCTTCATCATCTCAACCCAATCGTGGATCACAGATCTCTAAAGAGCTGCATACGAGCTTGGCTGTATACATACTTATGAGTGCCGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGAGATTGAATCTTCCAGATGGAAGAGAAGATCGGGAGGAGAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

161

Amino Acids

17.98

Weight (kDa)

9.27

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	303, 376
AccII	CGCG	1 cut(s)	337
AciI	CCGC	3 cut(s)	32, 204, 321
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	445
AluBI	AGCT	2 cut(s)	283, 294
AluI	AGCT	2 cut(s)	283, 294
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	121, 410
AvaI	CYCGRG	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	130, 449
BceAI	ACGGC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	3 cut(s)	204, 284, 321
BlsI	GCNGC	3 cut(s)	205, 285, 322
BmeT110I	CYCGRG	1 cut(s)	116
BmsI	GCATC	4 cut(s)	39, 52, 67, 102
BpiI	GAAGAC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	57, 412
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	150, 263, 270, 466
BspACI	CCGC	3 cut(s)	32, 204, 321
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	271
BssMI	GATC	4 cut(s)	150, 263, 270, 466
BssNAI	GTATAC	1 cut(s)	304
Bst1107I	GTATAC	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	169, 360, 398
Bst6I	CTCTTC	3 cut(s)	244, 430, 454
BstDEI	CTNAG	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	337
BstKTI	GATC	4 cut(s)	153, 266, 273, 469
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	150, 263, 270, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	174
CviAII	CATG	2 cut(s)	154, 226
CviJI	RGCY	5 cut(s)	98, 283, 294, 299, 332
CviKI_1	RGCY	5 cut(s)	98, 283, 294, 299, 332
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	152, 265, 272, 468
DpnII	GATC	4 cut(s)	150, 263, 270, 466
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	244, 430, 454
EarI	CTCTTC	3 cut(s)	244, 430, 454
Eco88I	CYCGRG	1 cut(s)	116
FaeI	CATG	2 cut(s)	157, 229
FaiI	YATR	8 cut(s)	15, 155, 227, 288, 304, 308, 314, 413
FatI	CATG	2 cut(s)	153, 225
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	2 cut(s)	303, 376
Fnu4HI	GCNGC	3 cut(s)	204, 284, 321
Fsp4HI	GCNGC	3 cut(s)	204, 284, 321
GluI	GCNGC	3 cut(s)	204, 284, 321
HaeIII	GGCC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	157, 229
HinfI	GANTC	1 cut(s)	445
HphI	GGTGA	2 cut(s)	121, 410
Hpy166II	GTNNAC	2 cut(s)	304, 377
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	3 cut(s)	74, 452, 470
Hpy8I	GTNNAC	2 cut(s)	304, 377
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	3 cut(s)	169, 360, 398
HpyCH4V	TGCA	3 cut(s)	80, 186, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	157, 229
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	150, 263, 270, 466
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	1 cut(s)	465
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	4 cut(s)	39, 52, 67, 102
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	4 cut(s)	152, 265, 272, 468
MboI	GATC	4 cut(s)	150, 263, 270, 466
MboII	GAAGA	7 cut(s)	29, 145, 231, 417, 440, 471, 476
MflI	RGATCY	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	2 cut(s)	181, 432
MluI	ACGCGT	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	332
MnlI	CCTC	8 cut(s)	49, 78, 100, 168, 247, 390, 433, 466
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	2 cut(s)	348, 484
MslI	CAYNNNNRTG	2 cut(s)	75, 311
Msp20I	TGGCCA	1 cut(s)	332
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	4 cut(s)	150, 263, 270, 466
NlaIII	CATG	2 cut(s)	157, 229
NmuCI	GTSAC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	445
PflFI	GACNNNGTC	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	205, 285, 322
PspXI	VCTCGAGB	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	75, 311
SaqAI	TTAA	2 cut(s)	348, 484
SatI	GCNGC	3 cut(s)	204, 284, 321
Sau3AI	GATC	4 cut(s)	150, 263, 270, 466
SetI	ASST	5 cut(s)	111, 195, 285, 296, 382
SfaNI	GCATC	4 cut(s)	39, 52, 67, 102
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	75, 311
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	181, 432
SsiI	CCGC	3 cut(s)	32, 204, 321
TaaI	ACNGT	3 cut(s)	169, 360, 398
TaqI	TCGA	4 cut(s)	47, 117, 195, 221
TasI	AATT	2 cut(s)	181, 432
TauI	GCSGC	2 cut(s)	206, 323
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	348, 484
Tru9I	TTAA	2 cut(s)	348, 484
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	17, 30, 231
TspRI	CASTG	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	116
XmiI	GTMKAC	2 cut(s)	303, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.