Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005455.1

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

39594 .. 40716

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005455.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgggagttccagctttctacagatggctagcggagaagtatccactcgtcgtcgtcgatgtggtggaagaagaaccggttgtaatcgacgaagtttcgattccggtcgacaccagtaagccaaaccctaacggcgagtatgacaatctgtacctcgacatgaatgggatcattcacccctacgacggtggaggcaatggtgggagcagtttatgggttggtgcgtcgaggtccgaatctgtttctggatttgtgactgttgcactaattatgcggcggttcttaggtgatggcatcgatgcaacatggtggcgggttttgtgcgattgtggtggactgacagaccgtaatgatggtggagcagcggatgtgaaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

126

Amino Acids

13.59

Weight (kDa)

4.26

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	5 cut(s)	32, 274, 277, 313, 365
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	76
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	167, 299
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	3 cut(s)	18, 284, 347
BceAI	ACGGC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	29, 379
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	275, 363
BlsI	GCNGC	2 cut(s)	276, 364
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmsI	GCATC	2 cut(s)	289, 303
BmtI	GCTAGC	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	297
BsaWI	WCCGGW	2 cut(s)	76, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	377
BshTI	ACCGGT	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	77, 104
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	5 cut(s)	32, 274, 277, 313, 365
BspANI	GGCC	1 cut(s)	377
BspDI	ATCGAT	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	188, 259, 347
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMCI	CGRYCG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	2 cut(s)	160, 306
CviJI	RGCY	4 cut(s)	14, 28, 121, 377
CviKI_1	RGCY	4 cut(s)	14, 28, 121, 377
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	231
FaeI	CATG	2 cut(s)	163, 309
FaiI	YATR	5 cut(s)	141, 161, 214, 272, 307
FatI	CATG	2 cut(s)	159, 305
FauI	CCCGC	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	275, 363
Fsp4HI	GCNGC	2 cut(s)	275, 363
FspBI	CTAG	2 cut(s)	29, 379
GluI	GCNGC	2 cut(s)	275, 363
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	77, 104
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	163, 309
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	100, 236
HpaII	CCGG	2 cut(s)	77, 104
HphI	GGTGA	2 cut(s)	167, 299
Hpy166II	GTNNAC	2 cut(s)	109, 335
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	109, 335
Hpy99I	CGWCG	6 cut(s)	53, 56, 59, 92, 188, 229
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	3 cut(s)	188, 259, 347
HpyCH4V	TGCA	2 cut(s)	263, 302
HpyF3I	CTNAG	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	163, 309
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	204, 359
LpnPI	CCDG	5 cut(s)	24, 90, 117, 127, 231
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	289, 303
MaeI	CTAG	2 cut(s)	29, 379
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	80, 83
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	3 cut(s)	164, 185, 222
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	77, 104
NdeII	GATC	1 cut(s)	168
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	163, 309
NmuCI	GTSAC	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	100, 236
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	276, 364
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SalI	GTCGAC	1 cut(s)	107
SatI	GCNGC	2 cut(s)	275, 363
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	231
SetI	ASST	4 cut(s)	16, 156, 233, 289
SfaNI	GCATC	2 cut(s)	289, 303
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	267
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	5 cut(s)	32, 274, 277, 313, 365
SspMI	CTAG	2 cut(s)	29, 379
StuI	AGGCCT	1 cut(s)	377
TaaI	ACNGT	3 cut(s)	188, 259, 347
TaqI	TCGA	7 cut(s)	57, 87, 98, 108, 156, 227, 297
TasI	AATT	1 cut(s)	267
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	100, 236
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	29, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.