Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

47229751 .. 47231037

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG370300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTCGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAAGGGCTGTGATGGTCAGTGACTTTGCTATTGCCCAGTTTCAGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGATTTGCTACTTCTACACAAATATAGCATTTGGTCTGGTACATGCTACTTTGAGGCATTCACCGGATATTCAGGGTAATCAATATATGATGACTAGTACATGCTATCGTTCAATGTTATTCTTACCTCATTGCCTGTGTGTTGCATTTTGCTTTTTTCTCCTTATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

117

Amino Acids

13.61

Weight (kDa)

8.25

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	30 - 86	8.5e-19	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	222, 280
AgsI	TTSAA	1 cut(s)	294
AhlI	ACTAGT	1 cut(s)	275
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	5
BccI	CCATC	2 cut(s)	19, 85
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	127
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	5
BmrI	ACTGGG	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	227, 285
BstSFI	CTRYAG	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	221, 279
CviAII	CATG	4 cut(s)	43, 149, 224, 282
CviJI	RGCY	2 cut(s)	59, 86
CviKI_1	RGCY	2 cut(s)	59, 86
CviQI	GTAC	2 cut(s)	221, 279
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	46, 152, 227, 285
FaiI	YATR	8 cut(s)	44, 150, 165, 206, 225, 267, 269, 283
FatI	CATG	4 cut(s)	42, 148, 223, 281
FbaI	TGATCA	1 cut(s)	39
FspBI	CTAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	4 cut(s)	46, 152, 227, 285
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	76, 326
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	46, 152, 227, 285
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	128, 203, 239, 258, 329
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	34
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	3 cut(s)	58, 228, 318
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	4 cut(s)	46, 152, 227, 285
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	2 cut(s)	227, 285
PaeR7I	CTCGAG	1 cut(s)	5
PctI	GAATGC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	222, 280
RsaNI	GTAC	2 cut(s)	221, 279
Sau3AI	GATC	1 cut(s)	39
SetI	ASST	2 cut(s)	61, 310
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	278
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	103
XceI	RCATGY	2 cut(s)	227, 285
XhoI	CTCGAG	1 cut(s)	5
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.