Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

22325537 .. 22329337

Gene Structure 3801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGAGACAATGAAGAAATTATTGACATAGCTAAACGCTTTTATAGAATTGTGATTGAGCGGAATTTCACAAGGGGCCATCTTTATATCAACAGCAAATTTAGACACACTGGGACAAGATGGAAAAGAGCTGACCAATGGAAGATTCGTCTTCAGCTGACTAAGCCTGTTACTTGGCCTCCATTGTTATGGGGAGTAGTTTGCGGAGCTGCTGCCTCTGGGTTTTGTTCAGAACGAGTAAAGGCTGAGGCTGCTGCTTCCAAGAATACTTCGACCATGATAAAGTCCTCTTCACCATCTCAGCCCAGTCGTGGATCACAGATCTCTAAAGAGCTGGTCAAGGCACATCAATACCGAGCTATTTATTTGACTTTTCACTTGTTCATTCATTTGCTTGTGTTTACGGCATTCCTCATATATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

10.17

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	2 cut(s)	61, 204
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	64, 98
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	6 cut(s)	32, 131, 157, 209, 334, 359
AluI	AGCT	6 cut(s)	32, 131, 157, 209, 334, 359
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	76, 176
ApeKI	GCWGC	4 cut(s)	209, 212, 251, 254
ApoI	RAATTY	2 cut(s)	64, 98
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	196, 199, 238, 241
BccI	CCATC	3 cut(s)	87, 114, 304
BceAI	ACGGC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	424
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	4 cut(s)	210, 213, 252, 255
BlsI	GCNGC	4 cut(s)	211, 214, 253, 256
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	77
BmrI	ACTGGG	2 cut(s)	120, 300
BmuI	ACTGGG	2 cut(s)	120, 300
BpiI	GAAGAC	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	115, 306
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	237, 314
BseNI	ACTGG	2 cut(s)	115, 306
BseXI	GCAGC	4 cut(s)	196, 199, 238, 241
BshFI	GGCC	2 cut(s)	78, 178
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	78, 178
Bsp143I	GATC	2 cut(s)	314, 321
BspACI	CCGC	2 cut(s)	61, 204
BspANI	GGCC	2 cut(s)	78, 178
BspCNI	CTCAG	2 cut(s)	238, 313
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	115, 306
BssMI	GATC	2 cut(s)	314, 321
Bst6I	CTCTTC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	162, 246, 300
BstKTI	GATC	2 cut(s)	317, 324
BstMBI	GATC	2 cut(s)	314, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 251
BstV1I	GCAGC	4 cut(s)	196, 199, 238, 241
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	78, 178
BtsIMutI	CAGTG	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	162, 246, 300
DpnI	GATC	2 cut(s)	316, 323
DpnII	GATC	2 cut(s)	314, 321
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	137
FaeI	CATG	1 cut(s)	280
FaiI	YATR	7 cut(s)	29, 45, 87, 190, 278, 416, 418
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	210, 213, 252, 255
Fsp4HI	GCNGC	4 cut(s)	210, 213, 252, 255
FspBI	CTAG	1 cut(s)	424
GluI	GCNGC	4 cut(s)	210, 213, 252, 255
HaeIII	GGCC	2 cut(s)	78, 178
Hin1II	CATG	1 cut(s)	280
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 251
HpyF3I	CTNAG	3 cut(s)	162, 246, 300
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	314, 321
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	96, 180, 204, 319, 320
Lsp1109I	GCAGC	4 cut(s)	196, 199, 238, 241
MaeI	CTAG	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	316, 323
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	2 cut(s)	314, 321
MboII	GAAGA	4 cut(s)	26, 143, 154, 282
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	4 cut(s)	18, 48, 64, 98
MnlI	CCTC	5 cut(s)	189, 226, 241, 298, 422
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	163, 251
NdeII	GATC	2 cut(s)	314, 321
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	211, 214, 253, 256
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	187
SatI	GCNGC	4 cut(s)	210, 213, 252, 255
Sau3AI	GATC	2 cut(s)	314, 321
Sau96I	GGNCC	1 cut(s)	76
SetI	ASST	6 cut(s)	34, 133, 159, 211, 336, 361
SmiMI	CAYNNNNRTG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	18, 48, 64, 98
SsiI	CCGC	2 cut(s)	61, 204
SspMI	CTAG	1 cut(s)	424
TaqI	TCGA	1 cut(s)	272
TasI	AATT	4 cut(s)	18, 48, 64, 98
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	4 cut(s)	209, 212, 251, 254
TspDTI	ATGAA	3 cut(s)	27, 373, 377
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	64, 98
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.