Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

63910694 .. 63913945

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG403500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACCTCTTTAATGTTTTGTTGGCATGCTTTTCTGATTTCATTTTTTGGGCTATTTGGGTTTTGTAGGATTGTGCTTGGTAATGGCTGTGATTGTTTTGATTCAGCTCTGAGTTATTGGCTTTGGTTGCATGCCCTGAAAGGGAAGGGAAACGGGTTCTGGTTCCGCGCCTACTGCCAAGAATTGGTTCTGGTTATGATGATCTCTGCATATGCTGCCTCGAAATCCGACGACATTGCACCTGCAATTTCACTCACAGAGAATGCATCAAAGCACTTCAATAAGATGAGATCCAAACATAATGAGGATCTATGCCTGGGAATTGGTAATGGAAGAATTTATGAGGAAGCTAGTACCAAGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACGTTGACGCTTGCTTATAAAAAGCTTGAGGAGTTTGAGTATTCTGCTTGGAACAATGAATTTCAAAAAGCAAAATCATCTATCGGGGCTGATAGGGAGGTGATGCTCAAGCGAGTAGCAGAAAAGATGGAAAAAGACTTGATCATGGTTGGTGTTATAGCTGTGGAGGACAAATTGCAAAACAGGATGCCCCAATGCATATACAATCTTGCACAACCTGATCTGAAGATCGGGGTGTTGACAGGGGATAAGATGGAAACTGCTGTGATGGCCAGTGACCTTGCTATTGCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTACTATAAAAGGATTGCTCATATGGCTGATGCTGCTACTTCTAAGAATACTTCGACCATGACAAAGTCCTCTTCATCATCTCAGCCCAATCGTGGATCACATATCTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

280

Amino Acids

31.6

Weight (kDa)

8.58

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	119 - 191	4.8e-08	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	220 - 260	3.6e-14	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	285, 315, 832
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	336, 452
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	3 cut(s)	355, 394, 731
AfiI	CCNNNNNNNGG	4 cut(s)	141, 184, 690, 821
AgsI	TTSAA	3 cut(s)	280, 367, 458
AjnI	CCWGG	1 cut(s)	315
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	5 cut(s)	107, 350, 383, 418, 554
AluI	AGCT	5 cut(s)	107, 350, 383, 418, 554
Alw26I	GTCTC	1 cut(s)	697
AlwI	GGATC	3 cut(s)	285, 315, 832
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	2 cut(s)	215, 761
ApoI	RAATTY	2 cut(s)	336, 452
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	202, 748
BccI	CCATC	3 cut(s)	514, 640, 655
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	216, 762
BlsI	GCNGC	2 cut(s)	217, 763
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	4 cut(s)	275, 486, 570, 748
BmuI	ACTGGG	1 cut(s)	679
BpuEI	CTTGAG	2 cut(s)	440, 485
BsaJI	CCNNGG	2 cut(s)	316, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 184, 690, 821
Bse1I	ACTGG	2 cut(s)	666, 685
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	316, 718
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	4 cut(s)	141, 184, 690, 821
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	101, 824
BseNI	ACTGG	2 cut(s)	666, 685
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	202, 748
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	665
BsiWI	CGTACG	1 cut(s)	392
BslI	CCNNNNNNNGG	4 cut(s)	141, 184, 690, 821
BsmAI	GTCTC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	665
Bsp143I	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
Bsp19I	CCATGG	1 cut(s)	718
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	2 cut(s)	102, 823
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	3 cut(s)	285, 315, 832
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	666, 685
BssECI	CCNNGG	2 cut(s)	316, 718
BssMI	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
BssT1I	CCWWGG	1 cut(s)	718
Bst2UI	CCWGG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	805
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	27, 132, 405
BstDEI	CTNAG	3 cut(s)	110, 771, 810
BstDSI	CCRYGG	1 cut(s)	718
BstF5I	GGATG	1 cut(s)	585
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	7 cut(s)	204, 293, 310, 537, 616, 624, 827
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 174, 215, 662, 752, 761
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	29, 134
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	202, 748
BstX2I	RGATCY	2 cut(s)	290, 307
BstYI	RGATCY	2 cut(s)	290, 307
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	673
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	3 cut(s)	27, 132, 405
CfoI	GCGC	1 cut(s)	170
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	354, 393, 730
CviAII	CATG	5 cut(s)	26, 131, 538, 719, 787
CviQI	GTAC	3 cut(s)	354, 393, 730
DdeI	CTNAG	3 cut(s)	110, 771, 810
DpnI	GATC	7 cut(s)	203, 292, 309, 536, 615, 623, 826
DpnII	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	805
EarI	CTCTTC	1 cut(s)	805
Eco130I	CCWWGG	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	718
EcoT22I	ATGCAT	2 cut(s)	268, 593
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	5 cut(s)	29, 134, 541, 722, 790
FatI	CATG	5 cut(s)	25, 130, 537, 718, 786
FauNDI	CATATG	2 cut(s)	211, 750
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	216, 762
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	216, 762
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	216, 762
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	665
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	29, 134, 541, 722, 790
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	2 cut(s)	399, 633
HindII	GTYRAC	2 cut(s)	399, 633
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	2 cut(s)	399, 633
Hpy188I	TCNGA	4 cut(s)	36, 111, 229, 618
Hpy8I	GTNNAC	2 cut(s)	399, 633
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	8 cut(s)	130, 209, 239, 245, 266, 571, 591, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 174, 215, 662, 752, 761
HpyF3I	CTNAG	3 cut(s)	110, 771, 810
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	29, 134, 541, 722, 790
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
Lsp1109I	GCAGC	2 cut(s)	202, 748
LweI	GCATC	4 cut(s)	275, 486, 570, 748
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	7 cut(s)	203, 292, 309, 536, 615, 623, 826
MboI	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
MboII	GAAGA	3 cut(s)	345, 631, 792
MflI	RGATCY	2 cut(s)	290, 307
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	6 cut(s)	182, 246, 321, 336, 452, 566
MluNI	TGGCCA	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	8 cut(s)	16, 229, 298, 337, 415, 484, 553, 808
Mox20I	TGGCCA	1 cut(s)	665
Mph1103I	ATGCAT	2 cut(s)	268, 593
MroXI	GAANNNNTTC	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	6 cut(s)	127, 174, 215, 662, 752, 761
NcoI	CCATGG	1 cut(s)	718
NdeI	CATATG	2 cut(s)	211, 750
NdeII	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
NlaIII	CATG	5 cut(s)	29, 134, 541, 722, 790
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	668
NsiI	ATGCAT	2 cut(s)	268, 593
NspI	RCATGY	2 cut(s)	29, 134
PaeI	GCATGC	2 cut(s)	29, 134
PaqCI	CACCTGC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	101
Pfl23II	CGTACG	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	793
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	217, 763
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	315
PspLI	CGTACG	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	290, 307
PsyI	GACNNNGTC	1 cut(s)	793
RsaI	GTAC	3 cut(s)	355, 394, 731
RsaNI	GTAC	3 cut(s)	354, 393, 730
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	2 cut(s)	216, 762
Sau3AI	GATC	7 cut(s)	201, 290, 307, 534, 613, 621, 824
ScrFI	CCNGG	1 cut(s)	317
SfaNI	GCATC	4 cut(s)	275, 486, 570, 748
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	419, 500
SmoI	CTYRAG	2 cut(s)	419, 500
SphI	GCATGC	2 cut(s)	29, 134
Sse9I	AATT	6 cut(s)	182, 246, 321, 336, 452, 566
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	718
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	221, 782
TasI	AATT	6 cut(s)	182, 246, 321, 336, 452, 566
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	2 cut(s)	215, 761
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	4 cut(s)	30, 384, 465, 792
TspRI	CASTG	1 cut(s)	673
Tth111I	GACNNNGTC	1 cut(s)	793
Van91I	CCANNNNNTGG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	336, 452
XceI	RCATGY	2 cut(s)	29, 134
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	2 cut(s)	268, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.