Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

14981943 .. 14985375

Gene Structure 3433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGAGTTCCAGCTTTCTATAGATGGCTAGCGGAGAAGTATCCACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCGGTTGTAATCGACGACGTTTCGATTCCGGTCCACACCAGTAAGCCAAATCCTAACGGCGACTCTGAGTTATTGGCTTTGGTTGCATGCCCTGAAAGGGAAGGGAAACAGGTTATGGTTCCGGGCCTACTGCCAAGAATTGGTTCTGGTTATGATGATCTCTGCATATGCCGCAATCGGAAAGCTCTAAACTTGACTGCACCCAGACCTTCTACTACTCCCAACCTTTCTCATCATCAGTGTAAGCAGCAGAAAAGATGGACCCATGGGTCACAGAGAGCTTCTAGAGTTGTTGCTTACTATGGCTTGAAGGAACCACCTTATAAACTTGATGCTTTGGAACCCTATATGAGTCAGAGGACATTGGAGGTTCACTGGGGAGGCCATCATCAATTTGAGCTTGAAAGTTCTTTTTGTGTTCTGGGTTTAACAATTTTTTGCCTAGTTGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

176

Amino Acids

19.81

Weight (kDa)

6.37

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	126 - 156	3.8e-07	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AasI	GACNNNNNNGTC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	215
AciI	CCGC	2 cut(s)	32, 247
AfiI	CCNNNNNNNGG	2 cut(s)	172, 215
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	385, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	4 cut(s)	14, 260, 356, 475
AluI	AGCT	4 cut(s)	14, 260, 356, 475
AoxI	GGCC	2 cut(s)	199, 457
ApeKI	GCWGC	1 cut(s)	322
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	217
AspS9I	GGNCC	3 cut(s)	106, 199, 336
AsuC2I	CCSGG	1 cut(s)	198
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	106, 336
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	3 cut(s)	18, 327, 468
BceAI	ACGGC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	4 cut(s)	29, 360, 518, 529
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	247, 323
BlsI	GCNGC	2 cut(s)	248, 324
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	106, 336
BmgT120I	GGNCC	3 cut(s)	106, 199, 336
BmiI	GGNNCC	4 cut(s)	195, 338, 390, 417
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	2 cut(s)	76, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 215
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	114, 455
BseDI	CCNNGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	172, 215
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	114, 455
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	201, 459
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	77, 104, 197
BslI	CCNNNNNNNGG	2 cut(s)	172, 215
BsnI	GGCC	2 cut(s)	201, 459
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	2 cut(s)	32, 247
BspANI	GGCC	2 cut(s)	201, 459
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	4 cut(s)	195, 338, 390, 417
BspOI	GCTAGC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	114, 455
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	30, 163
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 246
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	201, 459
BtgI	CCRYGG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	320, 448
Cac8I	GCNNGC	2 cut(s)	30, 163
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	106, 199, 336
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	2 cut(s)	162, 341
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	106, 336
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	165, 344
FatI	CATG	2 cut(s)	161, 340
FauNDI	CATATG	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	247, 323
Fsp4HI	GCNGC	2 cut(s)	247, 323
FspBI	CTAG	4 cut(s)	29, 360, 518, 529
GluI	GCNGC	2 cut(s)	247, 323
HaeIII	GGCC	2 cut(s)	201, 459
HapII	CCGG	3 cut(s)	77, 104, 197
Hin1II	CATG	2 cut(s)	165, 344
HinfI	GANTC	3 cut(s)	100, 137, 427
HpaII	CCGG	3 cut(s)	77, 104, 197
Hpy166II	GTNNAC	2 cut(s)	109, 448
Hpy188I	TCNGA	3 cut(s)	142, 255, 432
Hpy188III	TCNNGA	1 cut(s)	360
Hpy8I	GTNNAC	2 cut(s)	109, 448
Hpy99I	CGWCG	5 cut(s)	53, 56, 59, 92, 95
HpyAV	CCTTC	3 cut(s)	170, 294, 379
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	161, 240, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 246
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	165, 344
Kzo9I	GATC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	4 cut(s)	29, 360, 518, 529
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	80, 83
MluCI	AATT	3 cut(s)	213, 467, 507
MlyI	GAGTC	2 cut(s)	131, 436
MnlI	CCTC	3 cut(s)	426, 436, 449
MroXI	GAANNNNTTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	503
MspI	CCGG	3 cut(s)	77, 104, 197
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	158, 246
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	340
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	165, 344
NlaIV	GGNNCC	4 cut(s)	195, 338, 390, 417
NmuCI	GTSAC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	248, 324
PleI	GAGTC	2 cut(s)	131, 435
PpsI	GAGTC	2 cut(s)	131, 435
PsiI	TTATAA	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	195, 338, 390, 417
PspPI	GGNCC	3 cut(s)	106, 199, 336
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	2 cut(s)	247, 323
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	106, 199, 336
SchI	GAGTC	2 cut(s)	131, 436
ScrFI	CCNGG	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	106, 336
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	3 cut(s)	213, 467, 507
SsiI	CCGC	2 cut(s)	32, 247
SspMI	CTAG	4 cut(s)	29, 360, 518, 529
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	340
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	57, 87, 98
TasI	AATT	3 cut(s)	213, 467, 507
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	2 cut(s)	320, 455
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	345
TspRI	CASTG	2 cut(s)	320, 455
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	106, 336
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	4 cut(s)	29, 360, 518, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.