Rorug07G0018900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002873
Physical Location & Seq
Forward (+)
1459586 .. 1461326
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0018900.1

Sequence Viewer

Length: 1146 bp
ATGACGACCCCTACAATACAGTATGCAATACACAGAGAAACAGAGAGAAACAAAGAGATGGCAGCAGAGAATACCAGTAAAGTCTTTGAAGCACATCCTATGAAAGGTGGAGATGGCCCCAATAGCTATACAAAAAACTCCATTCTGCAGAGAGCTTCTGTTGATGCTGCCAAAGAACTTCTGAACAAGGCAATTGCAGAAAAGCTGGACATCGAAAGTTTCTTACCTTCCAAGTCTTTTCGCATTGCAGATCTGGGTTGCTCTACTGGACCAAATACTTTTATGGCAGTTGGAAACATACTTGAAGCTGTGGAGTCCAAGTATCGAAGCCAAGGGCTGAATTCTCAGATTCCCGACTTTCAAGTGTTCTTTAATGATCATGCCTCAAATGACTTTAACATGCTCTTCCAGTCCCTCCCTCAGAACAGGCAATACCATGCAGCCGGTGTACCAGGTTCTTTCTACAAACAGGTGTTACCTAATGCTTCCATTAACTTTGCTTACTCTTCTACTGCCATTCAATGGCTCTCTAGAGTACCAACAGCAGTAGCAGATAGTAATAGTCCTGCGTGGAACAAAGGACGCATTCATTACTCAAATGCCACAGATGAAGTAAAAAGGGCTTATGAAACTCAATATAGTGATGACATGGAGAGCTTCCTGCAAGCCAGGGCACAAGAGATTGTGTACGGAGGATTAATTGTACTTACATTTCCAGGCCGCCACAGTGACACCCCTCATTCTGATGCTCTGCCAAACATGGTCTTACAGCTTTTAGGAGCCTCCCTCATGGACTTGGTTAGAAAGGGAGTAGTTAGCGAAGAGAAGGTAGATTCATTTAACATACCTGTGTATTCAATGTCAACCAAAGAACTAGCAGCTGCTGTAGAAAGAAATGGATGTTTTAGCATAGAGATGGTGGCAGACTTGCTTGTTCCCCGGGTAGATGACACTAGCTCAATGCCACAACTAATTGCCTCTCACATTAGAGCTGGCATGGAGGGGATATTGAAGCAGCAATTTGGAGAGGAACTTTTAGATGAGCTCTTCAATTTGTATCGGGAAAAATGTGAAGAGCATATCTCCACCACAAACACAGGGAAGCCAGTTAACTTCCTTGTGGTGCTTAGACGCAAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

42.41

Weight (kDa)

5.47

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 69 - 378 5.8e-104 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 522
AciI CCGC 1 cut(s) 721
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 4 cut(s) 450, 537, 689, 705
AfiI CCNNNNNNNGG 2 cut(s) 104, 522
AgsI TTSAA 7 cut(s) 89, 305, 362, 521, 858, 1012, 1051
AjnI CCWGG 3 cut(s) 451, 668, 715
Alw21I GWGCWC 1 cut(s) 1047
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 939
AoxI GGCC 2 cut(s) 115, 718
ApeKI GCWGC 6 cut(s) 62, 167, 440, 878, 881, 1015
ApoI RAATTY 1 cut(s) 340
AseI ATTAAT 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 116, 269
AsuC2I CCSGG 2 cut(s) 940, 941
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 6 cut(s) 74, 154, 452, 868, 890, 1027
BccI CCATC 3 cut(s) 52, 107, 910
BciT130I CCWGG 3 cut(s) 453, 670, 717
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 2 cut(s) 940, 941
BfaI CTAG 3 cut(s) 531, 875, 954
BfmI CTRYAG 2 cut(s) 146, 885
BglII AGATCT 1 cut(s) 250
BisI GCNGC 7 cut(s) 63, 168, 441, 721, 879, 882, 1016
BlsI GCNGC 7 cut(s) 64, 169, 442, 722, 880, 883, 1017
Bme1390I CCNGG 5 cut(s) 453, 670, 717, 940, 941
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 939
BmgT120I GGNCC 2 cut(s) 116, 269
BmiI GGNNCC 2 cut(s) 118, 781
BmrFI CCNGG 5 cut(s) 453, 670, 717, 940, 941
BmsI GCATC 2 cut(s) 154, 736
BplI GAGNNNNNCTC 4 cut(s) 771, 803, 1067, 1099
BpuMI CCSGG 2 cut(s) 940, 941
BsaJI CCNNGG 4 cut(s) 331, 669, 938, 939
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 522
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 4 cut(s) 75, 271, 409, 1106
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 3 cut(s) 453, 670, 717
BseDI CCNNGG 4 cut(s) 331, 669, 938, 939
BseGI GGATG 2 cut(s) 94, 905
BseLI CCNNNNNNNGG 2 cut(s) 104, 522
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 359, 434
BseNI ACTGG 4 cut(s) 75, 271, 409, 1106
BseSI GKGCMC 1 cut(s) 676
BseXI GCAGC 6 cut(s) 74, 154, 452, 868, 890, 1027
BshFI GGCC 2 cut(s) 117, 720
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 2 cut(s) 444, 940
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 2 cut(s) 104, 522
BsmFI GGGAC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 2 cut(s) 117, 720
BsoBI CYCGRG 1 cut(s) 939
Bsp1286I GDGCHC 2 cut(s) 676, 1047
Bsp143I GATC 2 cut(s) 250, 376
BspACI CCGC 1 cut(s) 721
BspANI GGCC 2 cut(s) 117, 720
BspCNI CTCAG 2 cut(s) 358, 433
BspLI GGNNCC 2 cut(s) 118, 781
BspMAI CTGCAG 1 cut(s) 150
BspQI GCTCTTC 3 cut(s) 410, 1052, 1068
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 4 cut(s) 75, 271, 409, 1106
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 4 cut(s) 331, 669, 938, 939
BssMI GATC 2 cut(s) 250, 376
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 453, 670, 717
Bst4CI ACNGT 2 cut(s) 21, 728
Bst6I CTCTTC 5 cut(s) 410, 511, 816, 1052, 1068
BstC8I GCNNGC 2 cut(s) 666, 994
BstDEI CTNAG 3 cut(s) 345, 420, 1127
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 94, 905
BstKTI GATC 2 cut(s) 253, 379
BstMBI GATC 2 cut(s) 250, 376
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 3 cut(s) 453, 670, 717
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 5 cut(s) 451, 668, 715, 938, 939
BstSFI CTRYAG 2 cut(s) 146, 885
BstSLI GKGCMC 1 cut(s) 676
BstV1I GCAGC 6 cut(s) 74, 154, 452, 868, 890, 1027
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 2 cut(s) 117, 720
BtsCI GGATG 2 cut(s) 94, 905
BtsIMutI CAGTG 1 cut(s) 733
Cac8I GCNNGC 2 cut(s) 666, 994
CaiI CAGNNNCTG 1 cut(s) 884
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 116, 269
Cfr9I CCCGGG 1 cut(s) 939
CseI GACGC 2 cut(s) 591, 1140
CsiI ACCWGGT 1 cut(s) 451
Csp6I GTAC 4 cut(s) 449, 536, 688, 704
CviAII CATG 7 cut(s) 380, 400, 437, 649, 760, 790, 997
CviQI GTAC 4 cut(s) 449, 536, 688, 704
DdeI CTNAG 3 cut(s) 345, 420, 1127
DpnI GATC 2 cut(s) 252, 378
DpnII GATC 2 cut(s) 250, 376
Eam1104I CTCTTC 5 cut(s) 410, 511, 816, 1052, 1068
EarI CTCTTC 5 cut(s) 410, 511, 816, 1052, 1068
Ecl136II GAGCTC 1 cut(s) 1045
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 1047
Eco47I GGWCC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 1045
Eco88I CYCGRG 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 1045
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 3 cut(s) 451, 668, 715
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 1047
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 7 cut(s) 383, 403, 440, 652, 763, 793, 1000
FaqI GGGAC 1 cut(s) 397
FatI CATG 7 cut(s) 379, 399, 436, 648, 759, 789, 996
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 7 cut(s) 63, 168, 441, 721, 879, 882, 1016
FokI GGATG 2 cut(s) 81, 912
FriOI GRGCYC 1 cut(s) 1047
Fsp4HI GCNGC 7 cut(s) 63, 168, 441, 721, 879, 882, 1016
FspBI CTAG 3 cut(s) 531, 875, 954
GluI GCNGC 7 cut(s) 63, 168, 441, 721, 879, 882, 1016
HaeIII GGCC 2 cut(s) 117, 720
HapII CCGG 2 cut(s) 444, 940
HgaI GACGC 2 cut(s) 591, 1140
Hin1II CATG 7 cut(s) 383, 403, 440, 652, 763, 793, 1000
HincII GTYRAC 2 cut(s) 864, 1111
HindII GTYRAC 2 cut(s) 864, 1111
HinfI GANTC 3 cut(s) 314, 349, 833
HpaI GTTAAC 1 cut(s) 1111
HpaII CCGG 2 cut(s) 444, 940
Hpy166II GTNNAC 4 cut(s) 449, 688, 864, 1111
Hpy188I TCNGA 4 cut(s) 183, 348, 423, 745
Hpy188III TCNNGA 3 cut(s) 353, 531, 1061
Hpy8I GTNNAC 4 cut(s) 449, 688, 864, 1111
HpyAV CCTTC 2 cut(s) 237, 820
HpyCH4III ACNGT 2 cut(s) 21, 728
HpyCH4V TGCA 6 cut(s) 26, 148, 197, 248, 440, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 3 cut(s) 345, 420, 1127
Hsp92II CATG 7 cut(s) 383, 403, 440, 652, 763, 793, 1000
Ksp22I TGATCA 1 cut(s) 376
KspAI GTTAAC 1 cut(s) 1111
Kzo9I GATC 2 cut(s) 250, 376
LguI GCTCTTC 3 cut(s) 410, 1052, 1068
LmnI GCTCC 1 cut(s) 779
Lsp1109I GCAGC 6 cut(s) 74, 154, 452, 868, 890, 1027
LweI GCATC 2 cut(s) 154, 736
MabI ACCWGGT 1 cut(s) 451
MaeI CTAG 3 cut(s) 531, 875, 954
MaeIII GTNAC 2 cut(s) 474, 728
MalI GATC 2 cut(s) 252, 378
MboI GATC 2 cut(s) 250, 376
MboII GAAGA 5 cut(s) 397, 498, 833, 1039, 1085
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 676, 1047
MluCI AATT 6 cut(s) 192, 340, 699, 972, 1019, 1051
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 271
MseI TTAA 6 cut(s) 372, 396, 492, 698, 840, 1110
MslI CAYNNNNRTG 3 cut(s) 744, 848, 914
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 2 cut(s) 444, 940
MspR9I CCNGG 5 cut(s) 453, 670, 717, 940, 941
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 3 cut(s) 453, 670, 717
MwoI GCNNNNNNNGC 1 cut(s) 123
NciI CCSGG 2 cut(s) 940, 941
NdeII GATC 2 cut(s) 250, 376
NlaIII CATG 7 cut(s) 383, 403, 440, 652, 763, 793, 1000
NlaIV GGNNCC 2 cut(s) 118, 781
NmuCI GTSAC 1 cut(s) 728
NspI RCATGY 1 cut(s) 403
PciSI GCTCTTC 3 cut(s) 410, 1052, 1068
PctI GAATGC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 349, 833
PflMI CCANNNNNTGG 1 cut(s) 522
PkrI GCNGC 7 cut(s) 64, 169, 442, 722, 880, 883, 1017
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 698
Psp124BI GAGCTC 1 cut(s) 1047
Psp6I CCWGG 3 cut(s) 451, 668, 715
PspGI CCWGG 3 cut(s) 451, 668, 715
PspN4I GGNNCC 2 cut(s) 118, 781
PspPI GGNCC 2 cut(s) 116, 269
PsrI GAACNNNNNNTAC 2 cut(s) 416, 448
PstI CTGCAG 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 4 cut(s) 450, 537, 689, 705
RsaNI GTAC 4 cut(s) 449, 536, 688, 704
RseI CAYNNNNRTG 3 cut(s) 744, 848, 914
SacI GAGCTC 1 cut(s) 1047
SapI GCTCTTC 3 cut(s) 410, 1052, 1068
SaqAI TTAA 6 cut(s) 372, 396, 492, 698, 840, 1110
SatI GCNGC 7 cut(s) 63, 168, 441, 721, 879, 882, 1016
Sau3AI GATC 2 cut(s) 250, 376
Sau96I GGNCC 2 cut(s) 116, 269
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 5 cut(s) 453, 670, 717, 940, 941
SduI GDGCHC 2 cut(s) 676, 1047
SexAI ACCWGGT 1 cut(s) 451
SfaNI GCATC 2 cut(s) 154, 736
SfcI CTRYAG 2 cut(s) 146, 885
SinI GGWCC 1 cut(s) 269
SmaI CCCGGG 1 cut(s) 941
SmiMI CAYNNNNRTG 3 cut(s) 744, 848, 914
Sse9I AATT 6 cut(s) 192, 340, 699, 972, 1019, 1051
SsiI CCGC 1 cut(s) 721
SspMI CTAG 3 cut(s) 531, 875, 954
SstI GAGCTC 1 cut(s) 1047
StyD4I CCNGG 5 cut(s) 451, 668, 715, 938, 939
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 21, 728
TaqI TCGA 2 cut(s) 213, 325
TasI AATT 6 cut(s) 192, 340, 699, 972, 1019, 1051
TatI WGTACW 1 cut(s) 703
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 2 cut(s) 349, 833
Tru1I TTAA 6 cut(s) 372, 396, 492, 698, 840, 1110
Tru9I TTAA 6 cut(s) 372, 396, 492, 698, 840, 1110
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 6 cut(s) 62, 167, 440, 878, 881, 1015
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 5 cut(s) 116, 578, 624, 642, 825
TspGWI ACGGA 1 cut(s) 705
TspMI CCCGGG 1 cut(s) 939
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 530
XceI RCATGY 1 cut(s) 403
XmaI CCCGGG 1 cut(s) 939
XspI CTAG 3 cut(s) 531, 875, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.