Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

39488918 .. 39495824

Gene Structure 6907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATGATATCAGAGGACGAGGATGAGAGCTTGGCTCCATTCCTCAAAACGGAGGTGCTCTCAGAGGTCTCCAACCAGCGTGATGAAGAGGACATGGTCGATCTTGGTAGAAATTGCCCGGTTGAGTTCAAGGAGTACTATGTCCAAATGCAAGCTACCAAAAGAAGCCAAGCACCTGTTCCTTCACAGAAAGTTGCTGAGATAAAGAGAACTGATAAAACCGGAAATGAGGCATCAACTAAAATACTGGCCAGGCAGCTAATCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTAGGGCTCAAATGAGAGGAATAGCAACTCATACGCAGGTGTTGGTAGCTAGTCTCGGGATTTCAAGAAAGCGCGAGGCAGCACTGTTCTACCTAAAAGGATGCAGACCAAAAAAATGGAAGCCAGCAAAGTCAGGTTTCAAGTTAAATATTGGTACTGCATTCATTCCAAACCAGAATCATGGTGGAATTGGGAGAGTACTAAGAGACTCGAATGGACAGTTCAAAGCGGCCTTTATGCAGCCGGTGCTGCATACTGCATCTCCAAAGCAGTTTGAGCTGCTAGCCATTCGTGCAGGTTTGGACTTACTTGCCTCTCTTCAAATTCAGAATGTCATCGTTGAGAGTGACTGTATGGAAGCCATCTCTGAAGCTTGCTGTACAGAGTATGCTTTGTTAGCAAATGGAGGCCTAATAGATGATATTAGACATGTTTGGAGTAGACTATATAGATGGAGTGACACTCTGTCATACTCCAAGGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

261

Amino Acids

29.2

Weight (kDa)

9.05

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	63 - 114	4.7e-07	Snf7
RVT_3	PF13456	154 - 248	1.8e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	2 cut(s)	325, 584
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	1 cut(s)	372
AciI	CCGC	1 cut(s)	527
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	4 cut(s)	137, 454, 498, 679
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	130, 363, 439, 523, 620
AhdI	GACNNNNNGTC	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	7 cut(s)	30, 155, 259, 284, 347, 577, 671
AluI	AGCT	7 cut(s)	30, 155, 259, 284, 347, 577, 671
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	73, 356, 498
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	249, 528, 706
ApeKI	GCWGC	5 cut(s)	256, 377, 538, 547, 577
ApoI	RAATTY	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	268, 389, 534, 550, 564
BccI	CCATC	2 cut(s)	668, 744
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	73, 356, 498
BfaI	CTAG	2 cut(s)	348, 581
BfuAI	ACCTGC	2 cut(s)	325, 584
BisI	GCNGC	6 cut(s)	257, 378, 528, 539, 548, 578
BlsI	GCNGC	6 cut(s)	258, 379, 529, 540, 549, 579
BmcAI	AGTACT	2 cut(s)	137, 498
Bme1390I	CCNGG	2 cut(s)	119, 253
BmeRI	GACNNNNNGTC	1 cut(s)	763
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	119, 253
BmsI	GCATC	3 cut(s)	242, 389, 566
BmtI	GCTAGC	1 cut(s)	584
BplI	GAGNNNNNCTC	6 cut(s)	19, 51, 44, 76, 745, 777
Bpu10I	CCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	2 cut(s)	28, 404
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	75, 189
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	5 cut(s)	268, 389, 534, 550, 564
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	251, 530, 708
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	119, 222, 542
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	3 cut(s)	73, 356, 498
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	251, 530, 708
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	60, 307
Bsp1407I	TGTACA	1 cut(s)	677
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	3 cut(s)	251, 530, 708
BspCNI	CTCAG	2 cut(s)	74, 190
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	2 cut(s)	325, 584
BspOI	GCTAGC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	384, 519, 650
Bst6I	CTCTTC	2 cut(s)	81, 621
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	153, 423, 582, 673
BstDEI	CTNAG	4 cut(s)	61, 198, 269, 500
BstF5I	GGATG	2 cut(s)	28, 404
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	3 cut(s)	73, 356, 498
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	6 cut(s)	265, 544, 547, 574, 590, 695
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	117, 251
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	5 cut(s)	268, 389, 534, 550, 564
BstXI	CCANNNNNNTGG	2 cut(s)	414, 479
BsuRI	GGCC	3 cut(s)	251, 530, 708
BtsCI	GGATG	2 cut(s)	28, 404
BtsIMutI	CAGTG	1 cut(s)	380
BveI	ACCTGC	2 cut(s)	325, 584
Cac8I	GCNNGC	4 cut(s)	153, 423, 582, 673
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	541
Csp6I	GTAC	4 cut(s)	136, 453, 497, 678
CviAII	CATG	3 cut(s)	94, 479, 728
CviQI	GTAC	4 cut(s)	136, 453, 497, 678
DdeI	CTNAG	4 cut(s)	61, 198, 269, 500
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	81, 621
Eam1105I	GACNNNNNGTC	1 cut(s)	763
EarI	CTCTTC	2 cut(s)	81, 621
Eco130I	CCWWGG	1 cut(s)	774
Eco147I	AGGCCT	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	251
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	3 cut(s)	97, 482, 731
FatI	CATG	3 cut(s)	93, 478, 727
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	6 cut(s)	257, 378, 528, 539, 548, 578
FokI	GGATG	2 cut(s)	35, 411
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	6 cut(s)	257, 378, 528, 539, 548, 578
FspBI	CTAG	2 cut(s)	348, 581
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	6 cut(s)	257, 378, 528, 539, 548, 578
HaeIII	GGCC	3 cut(s)	251, 530, 708
HapII	CCGG	3 cut(s)	119, 222, 542
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	97, 482, 731
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	2 cut(s)	475, 506
HpaII	CCGG	3 cut(s)	119, 222, 542
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	4 cut(s)	13, 64, 627, 667
Hpy188III	TCNNGA	2 cut(s)	355, 363
Hpy8I	GTNNAC	1 cut(s)	740
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	3 cut(s)	384, 519, 650
HpyCH4V	TGCA	7 cut(s)	151, 402, 458, 538, 550, 557, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	265, 544, 547, 574, 590, 695
HpyF3I	CTNAG	4 cut(s)	61, 198, 269, 500
Hsp92II	CATG	3 cut(s)	97, 482, 731
HspAI	GCGC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	5 cut(s)	268, 389, 534, 550, 564
LweI	GCATC	3 cut(s)	242, 389, 566
MaeI	CTAG	2 cut(s)	348, 581
MaeIII	GTNAC	2 cut(s)	644, 755
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	98, 608
MhlI	GDGCHC	2 cut(s)	60, 307
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	112, 486, 621
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	96
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	3 cut(s)	119, 222, 542
MspR9I	CCNGG	2 cut(s)	119, 253
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	6 cut(s)	265, 544, 547, 574, 590, 695
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	100
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	97, 482, 731
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	644, 755
NspI	RCATGY	1 cut(s)	731
PaqCI	CACCTGC	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	708
PciI	ACATGT	1 cut(s)	727
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	475
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	258, 379, 529, 540, 549, 579
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PscI	ACATGT	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	4 cut(s)	137, 454, 498, 679
RsaNI	GTAC	4 cut(s)	136, 453, 497, 678
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	6 cut(s)	257, 378, 528, 539, 548, 578
Sau3AI	GATC	1 cut(s)	100
ScaI	AGTACT	2 cut(s)	137, 498
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	119, 253
SduI	GDGCHC	2 cut(s)	60, 307
SfaNI	GCATC	3 cut(s)	242, 389, 566
Sse9I	AATT	3 cut(s)	112, 486, 621
SseBI	AGGCCT	1 cut(s)	708
SsiI	CCGC	1 cut(s)	527
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	348, 581
StuI	AGGCCT	1 cut(s)	708
StyD4I	CCNGG	2 cut(s)	117, 251
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	3 cut(s)	384, 519, 650
TaqI	TCGA	2 cut(s)	99, 509
TasI	AATT	3 cut(s)	112, 486, 621
TatI	WGTACW	3 cut(s)	135, 496, 677
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	2 cut(s)	644, 755
TseI	GCWGC	5 cut(s)	256, 377, 538, 547, 577
Tsp45I	GTSAC	2 cut(s)	644, 755
TspDTI	ATGAA	2 cut(s)	99, 451
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	621
XceI	RCATGY	1 cut(s)	731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	2 cut(s)	348, 581
ZrmI	AGTACT	2 cut(s)	137, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.