5'-3' exoribonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD15G1369000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211 |
| rosa_laevigata | RLG00000001875 RLG00000032521 |
| rosa_multiflora | Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750 |
| rosa_rugosa | Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900 |
| rosa_samantha | Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 111 |
| AciI | CCGC | 1 cut(s) | 32 |
| AhlI | ACTAGT | 1 cut(s) | 116 |
| AluBI | AGCT | 1 cut(s) | 14 |
| AluI | AGCT | 1 cut(s) | 14 |
| Alw26I | GTCTC | 1 cut(s) | 229 |
| AsuNHI | GCTAGC | 1 cut(s) | 28 |
| BccI | CCATC | 3 cut(s) | 18, 204, 248 |
| BceAI | ACGGC | 1 cut(s) | 151 |
| BciVI | GTATCC | 1 cut(s) | 51 |
| BcoDI | GTCTC | 1 cut(s) | 229 |
| BcuI | ACTAGT | 1 cut(s) | 116 |
| BfaI | CTAG | 2 cut(s) | 29, 117 |
| BfmI | CTRYAG | 1 cut(s) | 19 |
| BfuI | GTATCC | 1 cut(s) | 51 |
| BmtI | GCTAGC | 1 cut(s) | 32 |
| Bsa29I | ATCGAT | 1 cut(s) | 60 |
| BsaI | GGTCTC | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 1 cut(s) | 218 |
| BsaWI | WCCGGW | 1 cut(s) | 106 |
| Bse1I | ACTGG | 1 cut(s) | 84 |
| BseCI | ATCGAT | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 84 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshVI | ATCGAT | 1 cut(s) | 60 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BsmAI | GTCTC | 1 cut(s) | 229 |
| Bso31I | GGTCTC | 1 cut(s) | 229 |
| Bsp19I | CCATGG | 1 cut(s) | 218 |
| BspACI | CCGC | 1 cut(s) | 32 |
| BspDI | ATCGAT | 1 cut(s) | 60 |
| BspOI | GCTAGC | 1 cut(s) | 32 |
| BspTNI | GGTCTC | 1 cut(s) | 229 |
| BsrI | ACTGG | 1 cut(s) | 84 |
| BssECI | CCNNGG | 1 cut(s) | 218 |
| BssT1I | CCWWGG | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 1 cut(s) | 30 |
| BstDSI | CCRYGG | 1 cut(s) | 218 |
| BstMAI | GTCTC | 1 cut(s) | 229 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstSFI | CTRYAG | 1 cut(s) | 19 |
| Bsu15I | ATCGAT | 1 cut(s) | 60 |
| BsuI | GTATCC | 1 cut(s) | 51 |
| BsuTUI | ATCGAT | 1 cut(s) | 60 |
| BtgI | CCRYGG | 1 cut(s) | 218 |
| Cac8I | GCNNGC | 1 cut(s) | 30 |
| ClaI | ATCGAT | 1 cut(s) | 60 |
| CviAII | CATG | 2 cut(s) | 163, 219 |
| CviJI | RGCY | 3 cut(s) | 14, 28, 124 |
| CviKI_1 | RGCY | 3 cut(s) | 14, 28, 124 |
| Eco130I | CCWWGG | 1 cut(s) | 218 |
| Eco31I | GGTCTC | 1 cut(s) | 229 |
| EcoT14I | CCWWGG | 1 cut(s) | 218 |
| ErhI | CCWWGG | 1 cut(s) | 218 |
| FaeI | CATG | 2 cut(s) | 166, 222 |
| FaiI | YATR | 4 cut(s) | 144, 154, 164, 220 |
| FatI | CATG | 2 cut(s) | 162, 218 |
| FblI | GTMKAC | 1 cut(s) | 111 |
| FspBI | CTAG | 2 cut(s) | 29, 117 |
| HapII | CCGG | 1 cut(s) | 107 |
| Hin1II | CATG | 2 cut(s) | 166, 222 |
| HincII | GTYRAC | 1 cut(s) | 112 |
| HindII | GTYRAC | 1 cut(s) | 112 |
| HinfI | GANTC | 1 cut(s) | 103 |
| HpaII | CCGG | 1 cut(s) | 107 |
| Hpy166II | GTNNAC | 1 cut(s) | 112 |
| Hpy188III | TCNNGA | 1 cut(s) | 260 |
| Hpy8I | GTNNAC | 1 cut(s) | 112 |
| Hpy99I | CGWCG | 3 cut(s) | 53, 56, 95 |
| Hsp92II | CATG | 2 cut(s) | 166, 222 |
| LpnPI | CCDG | 3 cut(s) | 24, 65, 120 |
| MaeI | CTAG | 2 cut(s) | 29, 117 |
| MboII | GAAGA | 2 cut(s) | 83, 86 |
| MnlI | CCTC | 1 cut(s) | 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 62 |
| MspI | CCGG | 1 cut(s) | 107 |
| NcoI | CCATGG | 1 cut(s) | 218 |
| NheI | GCTAGC | 1 cut(s) | 28 |
| NlaIII | CATG | 2 cut(s) | 166, 222 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 57 |
| PfeI | GAWTC | 1 cut(s) | 103 |
| RseI | CAYNNNNRTG | 1 cut(s) | 62 |
| SalI | GTCGAC | 1 cut(s) | 110 |
| SetI | ASST | 2 cut(s) | 16, 159 |
| SfcI | CTRYAG | 1 cut(s) | 19 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 62 |
| SpeI | ACTAGT | 1 cut(s) | 116 |
| SsiI | CCGC | 1 cut(s) | 32 |
| SspMI | CTAG | 2 cut(s) | 29, 117 |
| StyI | CCWWGG | 1 cut(s) | 218 |
| TaqI | TCGA | 7 cut(s) | 60, 90, 101, 111, 159, 232, 261 |
| TfiI | GAWTC | 1 cut(s) | 103 |
| TspDTI | ATGAA | 1 cut(s) | 179 |
| XmiI | GTMKAC | 1 cut(s) | 111 |
| XspI | CTAG | 2 cut(s) | 29, 117 |