Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

24899169 .. 24906169

Gene Structure 7001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATAGTTCGTAATTGCTTGCAGGCTGTGATGGCCAGTGACTTTGCTATTGCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGATTTGCTACTTCTACAAAAATATAGCATTTGGTCTGGTACATGCTACTTTGAGGCATTCACCGGATATTCAGGGTTCCTTAGATGATTTCTGCGTCAAAACAGAGTCCCTCAAAGTAGAGCTCTCTGTTTCGGACCCGCTTAATTGGGGAGTGGCCGCGGAGTCAATGATAGGTAGCCACCTTGATGAAGTGAAGCGCATGGTGGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

111

Amino Acids

12.63

Weight (kDa)

6.5

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	10 - 56	3.3e-22	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AciI	CCGC	3 cut(s)	260, 279, 281
AcoI	YGGCCR	3 cut(s)	33, 276, 327
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	3 cut(s)	33, 276, 327
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	199, 258
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	88, 279
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	36, 55
BseDI	CCNNGG	2 cut(s)	88, 279
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	36, 55
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	35, 278, 329
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	35, 278, 329
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	3 cut(s)	260, 279, 281
BspANI	GGCC	3 cut(s)	35, 278, 329
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	199, 258
BsrI	ACTGG	2 cut(s)	36, 55
BssECI	CCNNGG	2 cut(s)	88, 279
BssT1I	CCWWGG	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	20, 24
BstDEI	CTNAG	2 cut(s)	117, 202
BstDSI	CCRYGG	2 cut(s)	88, 279
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	167
BstUI	CGCG	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	35, 278, 329
BtgI	CCRYGG	2 cut(s)	88, 279
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	20, 24
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	256
Cfr42I	CCGCGG	1 cut(s)	282
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	3 cut(s)	89, 164, 322
CviJI	RGCY	6 cut(s)	26, 35, 244, 278, 300, 329
CviKI_1	RGCY	6 cut(s)	26, 35, 244, 278, 300, 329
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	117, 202
EaeI	YGGCCR	3 cut(s)	33, 276, 327
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	92, 167, 325
FaiI	YATR	5 cut(s)	90, 105, 146, 165, 323
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	3 cut(s)	88, 163, 321
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	35, 278, 329
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	92, 167, 325
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	227, 284
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	120, 256
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	117, 202
Hsp92II	CATG	3 cut(s)	92, 167, 325
HspAI	GCGC	1 cut(s)	319
KspI	CCGCGG	1 cut(s)	282
LpnPI	CCDG	6 cut(s)	8, 49, 68, 143, 179, 198
MaeIII	GTNAC	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	13, 265
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	236, 293
MnlI	CCTC	2 cut(s)	168, 242
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	88
NlaIII	CATG	3 cut(s)	92, 167, 325
NlaIV	GGNNCC	2 cut(s)	199, 258
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	167
PctI	GAATGC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	235, 292
PpsI	GAGTC	2 cut(s)	235, 292
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	199, 258
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	246
SacII	CCGCGG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	2 cut(s)	236, 293
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	3 cut(s)	246, 298, 306
Sfr303I	CCGCGG	1 cut(s)	282
SgrBI	CCGCGG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	13, 265
SsiI	CCGC	3 cut(s)	260, 279, 281
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	88
TasI	AATT	2 cut(s)	13, 265
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.