Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

24908079 .. 24912797

Gene Structure 4719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG245000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCCCTTAGTAGAAGCTCAAGAGGTGCTACTATCCAAGATCGTGGGAGCTCCCAATTCATTGAAGCTGGCTTTTGCTGGGCTCAATATGGCGGAGTTCTTGAAGAACTGGGTAGCGACAGGCCATTCAAACCAAGTTACTCTGAGTTATTGGCTTTGGTTGCATGCCCTGAAAGGGAAGGGAAACGGGTTCTGGTTCCGGGCCTATTGCCAAGAATTGGTTCTGGTTATGATGATCTCTGCATATGCTGCCTCGACATCCGACGACATTGCACCTGCAATTTCACTCACAGAGAATGCATCAAAGCACTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.64

Weight (kDa)

7.54

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	218
AciI	CCGC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	175, 218
AgsI	TTSAA	4 cut(s)	65, 104, 130, 314
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AluBI	AGCT	3 cut(s)	18, 51, 68
AluI	AGCT	3 cut(s)	18, 51, 68
Alw21I	GWGCWC	1 cut(s)	53
AoxI	GGCC	3 cut(s)	3, 122, 202
ApeKI	GCWGC	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	4, 202
AsuC2I	CCSGG	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BcnI	CCSGG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	4, 202
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	4
BpuMI	CCSGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 218
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	175, 218
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	5, 124, 204
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	175, 218
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	5, 124, 204
Bsp1286I	GDGCHC	2 cut(s)	53, 85
Bsp143I	GATC	2 cut(s)	40, 235
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	3 cut(s)	5, 124, 204
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	40, 235
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	70, 166
BstDEI	CTNAG	2 cut(s)	8, 144
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	43, 238
BstMBI	GATC	2 cut(s)	40, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 249
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	5, 124, 204
BtsCI	GGATG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	70, 166
Cfr13I	GGNCC	2 cut(s)	4, 202
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	9 cut(s)	5, 18, 51, 68, 72, 83, 124, 155, 204
CviKI_1	RGCY	9 cut(s)	5, 18, 51, 68, 72, 83, 124, 155, 204
DdeI	CTNAG	2 cut(s)	8, 144
DpnI	GATC	2 cut(s)	42, 237
DpnII	GATC	2 cut(s)	40, 235
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 85
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	2 cut(s)	53, 85
FaeI	CATG	1 cut(s)	168
FaiI	YATR	5 cut(s)	90, 166, 231, 245, 247
FatI	CATG	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	53, 85
Fsp4HI	GCNGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	5, 124, 204
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	1 cut(s)	168
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	145, 263
Hpy188III	TCNNGA	2 cut(s)	21, 101
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	164, 243, 273, 279, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 249
HpyF3I	CTNAG	2 cut(s)	8, 144
Hsp92II	CATG	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	40, 235
LmnI	GCTCC	2 cut(s)	48, 56
LpnPI	CCDG	9 cut(s)	54, 64, 95, 106, 179, 183, 210, 213, 289
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	42, 237
MboI	GATC	2 cut(s)	40, 235
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	53, 85
MluCI	AATT	3 cut(s)	56, 216, 280
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	2 cut(s)	17, 263
Mph1103I	ATGCAT	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	220
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	161, 249
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	2 cut(s)	40, 235
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	4, 202
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	40, 235
Sau96I	GGNCC	2 cut(s)	4, 202
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	53, 85
SetI	ASST	5 cut(s)	20, 28, 53, 70, 278
SfaNI	GCATC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	3 cut(s)	56, 216, 280
SsiI	CCGC	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	199
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	56, 216, 280
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.