Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002942.1

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

140866 .. 142442

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002942.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgggagttccagctttctacagatggctagcggagaagtatccactcgtcatcgtcaatgtggtggaagaagaaccggttgtaatcgacgacgtttcgattccagtccacactagtaagccaaatcctaacggcgagtatgacaatctgtacctcgacatgaatgggattattctcaatatcatcaaaaaccaccaatctctcatcaaaacaccatgggtttctcatcaaaacaccatctcgattagggttcgactgcacacatcgattaagattttgatccctcttcttgttcatgtctatctctccgaagccaacccatttcctctctcatctcccctcacctgcaaaccaaaaaggaagaagctcgaagttttgattctgagcaacatcatcaggaagaaaagagggggggggggagaggggctaggattgtttgctcgatcgattgtgcttggtaatggctgcgattgttttgattcagctcttagttattggctttggttgcatgccctgaaagggaagggaaacaggttctggttctgggcctactgccaagaattggttctggttatgatgatctctgcatatgctgcctcgacatccgacgacattgtacctgcaatttcactcacagagaatgcatcaaagcacttcaataagatgagatccaaatataatgaggatctatgcctgggaattggtgttaaacagggtcgatattcgggcatgtcgtataccatggacttctatagcagagaaaatgcaagaccagatgattcaaccattaaatataatggttttaagatacgtcagccttcatattttcattctcttaatcaagtgagcttggactatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

287

Amino Acids

32.59

Weight (kDa)

9.04

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	2 cut(s)	353, 628
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	737
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	3 cut(s)	274, 663, 693
AfaI	GTAC	2 cut(s)	152, 618
AfiI	CCNNNNNNNGG	2 cut(s)	519, 562
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	658, 783
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	4 cut(s)	14, 367, 485, 849
AluI	AGCT	4 cut(s)	14, 367, 485, 849
AlwI	GGATC	3 cut(s)	274, 663, 693
AlwNI	CAGNNNCTG	1 cut(s)	537
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	465, 593
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	334
AsuNHI	GCTAGC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	452, 580
BccI	CCATC	2 cut(s)	18, 245
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	29, 114, 428
BfmI	CTRYAG	2 cut(s)	19, 751
BfuAI	ACCTGC	2 cut(s)	353, 628
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	466, 594
BlsI	GCNGC	2 cut(s)	467, 595
Bme1390I	CCNGG	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	1 cut(s)	653
BmtI	GCTAGC	1 cut(s)	32
Bsa29I	ATCGAT	2 cut(s)	266, 446
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	215, 694, 741
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 562
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	2 cut(s)	266, 446
BseDI	CCNNGG	3 cut(s)	215, 694, 741
BseGI	GGATG	1 cut(s)	602
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	519, 562
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	452, 580
BsgI	GTGCAG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	76
BshVI	ATCGAT	2 cut(s)	266, 446
BsiEI	CGRYCG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	519, 562
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	548
Bsp143I	GATC	5 cut(s)	279, 443, 579, 668, 685
Bsp19I	CCATGG	2 cut(s)	215, 741
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	375
BspDI	ATCGAT	2 cut(s)	266, 446
BspMI	ACCTGC	2 cut(s)	353, 628
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	274, 663, 693
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	215, 694, 741
BssMI	GATC	5 cut(s)	279, 443, 579, 668, 685
BssNAI	GTATAC	1 cut(s)	738
BssT1I	CCWWGG	2 cut(s)	215, 741
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	30, 510
BstDEI	CTNAG	2 cut(s)	383, 488
BstDSI	CCRYGG	2 cut(s)	215, 741
BstF5I	GGATG	1 cut(s)	602
BstKTI	GATC	5 cut(s)	282, 446, 582, 671, 688
BstMBI	GATC	5 cut(s)	279, 443, 579, 668, 685
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 593
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	2 cut(s)	512, 733
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	2 cut(s)	19, 751
BstV1I	GCAGC	2 cut(s)	452, 580
BstX2I	RGATCY	2 cut(s)	668, 685
BstYI	RGATCY	2 cut(s)	668, 685
BstZ17I	GTATAC	1 cut(s)	738
Bsu15I	ATCGAT	2 cut(s)	266, 446
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	548
BsuTUI	ATCGAT	2 cut(s)	266, 446
BtgI	CCRYGG	2 cut(s)	215, 741
BtsCI	GGATG	1 cut(s)	602
BveI	ACCTGC	2 cut(s)	353, 628
Cac8I	GCNNGC	2 cut(s)	30, 510
CaiI	CAGNNNCTG	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	546
ClaI	ATCGAT	2 cut(s)	266, 446
Csp6I	GTAC	2 cut(s)	151, 617
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	6 cut(s)	160, 216, 296, 509, 730, 742
CviQI	GTAC	2 cut(s)	151, 617
DdeI	CTNAG	2 cut(s)	383, 488
DpnI	GATC	5 cut(s)	281, 445, 581, 670, 687
DpnII	GATC	5 cut(s)	279, 443, 579, 668, 685
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	215, 741
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	215, 741
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	2 cut(s)	215, 741
FaeI	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
FatI	CATG	6 cut(s)	159, 215, 295, 508, 729, 741
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	2 cut(s)	466, 594
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	2 cut(s)	466, 594
FspBI	CTAG	3 cut(s)	29, 114, 428
GluI	GCNGC	2 cut(s)	466, 594
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
HinfI	GANTC	4 cut(s)	100, 379, 479, 779
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	109, 738
Hpy188I	TCNGA	3 cut(s)	310, 384, 607
Hpy188III	TCNNGA	2 cut(s)	241, 397
Hpy8I	GTNNAC	2 cut(s)	109, 738
Hpy99I	CGWCG	3 cut(s)	92, 95, 611
HpyAV	CCTTC	2 cut(s)	517, 828
HpyCH4IV	ACGT	2 cut(s)	93, 811
HpyCH4V	TGCA	7 cut(s)	259, 348, 508, 587, 623, 644, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 593
HpyF3I	CTNAG	2 cut(s)	383, 488
HpySE526I	ACGT	2 cut(s)	93, 811
Hsp92II	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
Kzo9I	GATC	5 cut(s)	279, 443, 579, 668, 685
Lsp1109I	GCAGC	2 cut(s)	452, 580
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	3 cut(s)	29, 114, 428
MaeII	ACGT	2 cut(s)	93, 811
MalI	GATC	5 cut(s)	281, 445, 581, 670, 687
MboI	GATC	5 cut(s)	279, 443, 579, 668, 685
MboII	GAAGA	5 cut(s)	80, 83, 278, 373, 412
MflI	RGATCY	2 cut(s)	668, 685
MluCI	AATT	3 cut(s)	560, 624, 699
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	8 cut(s)	164, 294, 336, 350, 401, 415, 607, 676
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	5 cut(s)	270, 708, 789, 804, 837
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	505, 593
NcoI	CCATGG	2 cut(s)	215, 741
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	5 cut(s)	279, 443, 579, 668, 685
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	2 cut(s)	512, 733
PaeI	GCATGC	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	100, 379, 479, 779
PflMI	CCANNNNNTGG	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	467, 595
Ple19I	CGATCG	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspPI	GGNCC	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	668, 685
PvuI	CGATCG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	152, 618
RsaNI	GTAC	2 cut(s)	151, 617
SaqAI	TTAA	5 cut(s)	270, 708, 789, 804, 837
SatI	GCNGC	2 cut(s)	466, 594
Sau3AI	GATC	5 cut(s)	279, 443, 579, 668, 685
Sau96I	GGNCC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	695
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	2 cut(s)	19, 751
SpeI	ACTAGT	1 cut(s)	113
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	3 cut(s)	560, 624, 699
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	3 cut(s)	29, 114, 428
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	215, 741
TaiI	ACGT	2 cut(s)	96, 814
TasI	AATT	3 cut(s)	560, 624, 699
TfiI	GAWTC	4 cut(s)	100, 379, 479, 779
Tru1I	TTAA	5 cut(s)	270, 708, 789, 804, 837
Tru9I	TTAA	5 cut(s)	270, 708, 789, 804, 837
TseI	GCWGC	2 cut(s)	465, 593
TspDTI	ATGAA	4 cut(s)	176, 284, 810, 818
Van91I	CCANNNNNTGG	1 cut(s)	562
XceI	RCATGY	2 cut(s)	512, 733
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	29, 114, 428
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.