Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006619.1

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

9281 .. 10866

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgggagttccagctttctacagatggctagcggagaagtatccattcatcgtcgtcgatgtggtggaagaagaaccggttgtaatcgacgacgttttgattccggtcgacaccagtaagccaaaccctaacggcgagtatgacaatctgattgtgcttggtaatggctgtgattgttttgattcagctctgagttattggctttggttgcatgccctgaaagggaagggaaacgggttctggttccgcgcctactgccaagaattggttctggttatgatgatctctgcatatgctgcctcgaaatccgacgacattgcacctgcaatttcactcacagagaatgcatcaaagcacttcaataagatgagatccaaacataatgaggatctatgcctgggaattggtgttaaacagggtggatattcgggcatgtcgtataccatggacttccatagcaaagaaaatgcaagaccagatgattcaaccattgaatataatggttttaagataggtcagccttcatattttgattctcttagtcaagtgagcttggactatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

188

Amino Acids

21.08

Weight (kDa)

4.72

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	2 cut(s)	108, 440
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	32, 247
AclWI	GGATC	2 cut(s)	366, 396
AfiI	CCNNNNNNNGG	2 cut(s)	222, 265
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	361, 486, 494
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	3 cut(s)	14, 188, 552
AluI	AGCT	3 cut(s)	14, 188, 552
AlwI	GGATC	2 cut(s)	366, 396
ApeKI	GCWGC	1 cut(s)	296
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	251
AsuNHI	GCTAGC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	356
BmtI	GCTAGC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	397, 444
BsaWI	WCCGGW	2 cut(s)	76, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 265
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	397, 444
BseLI	CCNNNNNNNGG	2 cut(s)	222, 265
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	77, 104
BslI	CCNNNNNNNGG	2 cut(s)	222, 265
BsmI	GAATGC	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	282, 371, 388
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	32, 247
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	366, 396
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	397, 444
BssMI	GATC	3 cut(s)	282, 371, 388
BssNAI	GTATAC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	444
Bst1107I	GTATAC	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	398
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	30, 213
BstDEI	CTNAG	2 cut(s)	191, 539
BstDSI	CCRYGG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	3 cut(s)	285, 374, 391
BstMBI	GATC	3 cut(s)	282, 371, 388
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 255, 296
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	2 cut(s)	215, 436
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	371, 388
BstYI	RGATCY	2 cut(s)	371, 388
BstZ17I	GTATAC	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	30, 213
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	76
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	3 cut(s)	212, 433, 445
CviJI	RGCY	8 cut(s)	14, 28, 121, 168, 188, 202, 520, 552
CviKI_1	RGCY	8 cut(s)	14, 28, 121, 168, 188, 202, 520, 552
DdeI	CTNAG	2 cut(s)	191, 539
DpnI	GATC	3 cut(s)	284, 373, 390
DpnII	GATC	3 cut(s)	282, 371, 388
Eco130I	CCWWGG	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	215, 436, 448
FatI	CATG	3 cut(s)	211, 432, 444
FauNDI	CATATG	1 cut(s)	292
FblI	GTMKAC	2 cut(s)	108, 440
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	297
HapII	CCGG	2 cut(s)	77, 104
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	215, 436, 448
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	4 cut(s)	100, 182, 482, 533
HpaII	CCGG	2 cut(s)	77, 104
Hpy166II	GTNNAC	2 cut(s)	109, 441
Hpy188I	TCNGA	3 cut(s)	150, 192, 310
Hpy8I	GTNNAC	2 cut(s)	109, 441
Hpy99I	CGWCG	5 cut(s)	56, 59, 92, 95, 314
HpyAV	CCTTC	2 cut(s)	220, 531
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	211, 290, 320, 326, 347, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 255, 296
HpyF3I	CTNAG	2 cut(s)	191, 539
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	215, 436, 448
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	282, 371, 388
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	93
MalI	GATC	3 cut(s)	284, 373, 390
MboI	GATC	3 cut(s)	282, 371, 388
MboII	GAAGA	2 cut(s)	80, 83
MflI	RGATCY	2 cut(s)	371, 388
MluCI	AATT	3 cut(s)	263, 327, 402
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	2 cut(s)	310, 379
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	2 cut(s)	411, 507
MspI	CCGG	2 cut(s)	77, 104
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	208, 255, 296
NcoI	CCATGG	1 cut(s)	444
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	3 cut(s)	282, 371, 388
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	3 cut(s)	215, 436, 448
NlaIV	GGNNCC	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	2 cut(s)	215, 436
PaeI	GCATGC	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	100, 182, 482, 533
PflMI	CCANNNNNTGG	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	371, 388
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	411, 507
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	3 cut(s)	282, 371, 388
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	6 cut(s)	16, 96, 190, 325, 517, 554
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	19
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	3 cut(s)	263, 327, 402
SsiI	CCGC	2 cut(s)	32, 247
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	444
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	57, 87, 108, 302
TasI	AATT	3 cut(s)	263, 327, 402
TfiI	GAWTC	4 cut(s)	100, 182, 482, 533
Tru1I	TTAA	2 cut(s)	411, 507
Tru9I	TTAA	2 cut(s)	411, 507
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	37, 513
Van91I	CCANNNNNTGG	1 cut(s)	265
XceI	RCATGY	2 cut(s)	215, 436
XmiI	GTMKAC	2 cut(s)	108, 440
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.