Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD15G1369000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211 |
| rosa_laevigata | RLG00000001875 RLG00000032521 |
| rosa_multiflora | Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750 |
| rosa_rugosa | Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900 |
| rosa_samantha | Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 630 |
| AarI | CACCTGC | 1 cut(s) | 331 |
| Acc36I | ACCTGC | 1 cut(s) | 331 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 265 |
| AccI | GTMKAC | 2 cut(s) | 108, 440 |
| AccII | CGCG | 1 cut(s) | 1134 |
| AciI | CCGC | 2 cut(s) | 32, 1134 |
| AclWI | GGATC | 3 cut(s) | 366, 396, 976 |
| AcoI | YGGCCR | 1 cut(s) | 807 |
| AcsI | RAATTY | 3 cut(s) | 305, 555, 671 |
| AfaI | GTAC | 3 cut(s) | 574, 613, 1014 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 222, 265, 834, 965 |
| AgeI | ACCGGT | 1 cut(s) | 76 |
| AgsI | TTSAA | 5 cut(s) | 361, 486, 494, 586, 677 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 50 |
| AjnI | CCWGG | 1 cut(s) | 396 |
| AluBI | AGCT | 9 cut(s) | 14, 188, 569, 602, 637, 773, 988, 1081, 1105 |
| AluI | AGCT | 9 cut(s) | 14, 188, 569, 602, 637, 773, 988, 1081, 1105 |
| Alw26I | GTCTC | 1 cut(s) | 841 |
| AlwI | GGATC | 3 cut(s) | 366, 396, 976 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1120 |
| Ama87I | CYCGRG | 1 cut(s) | 1082 |
| AoxI | GGCC | 2 cut(s) | 249, 807 |
| ApeKI | GCWGC | 4 cut(s) | 168, 296, 905, 908 |
| ApoI | RAATTY | 3 cut(s) | 305, 555, 671 |
| AsiGI | ACCGGT | 1 cut(s) | 76 |
| AspS9I | GGNCC | 1 cut(s) | 249 |
| AsuC2I | CCSGG | 1 cut(s) | 248 |
| AsuHPI | GGTGA | 1 cut(s) | 724 |
| AsuNHI | GCTAGC | 1 cut(s) | 28 |
| AvaI | CYCGRG | 1 cut(s) | 1082 |
| BalI | TGGCCA | 1 cut(s) | 809 |
| BbvI | GCAGC | 4 cut(s) | 155, 283, 892, 895 |
| BccI | CCATC | 4 cut(s) | 18, 733, 799, 889 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 299, 333, 1112, 1146 |
| BciT130I | CCWGG | 1 cut(s) | 398 |
| BclI | TGATCA | 1 cut(s) | 753 |
| BcnI | CCSGG | 1 cut(s) | 248 |
| BcoDI | GTCTC | 1 cut(s) | 841 |
| BfaI | CTAG | 3 cut(s) | 29, 570, 1007 |
| BfmI | CTRYAG | 3 cut(s) | 19, 454, 768 |
| BfuAI | ACCTGC | 1 cut(s) | 331 |
| BglII | AGATCT | 1 cut(s) | 975 |
| BisI | GCNGC | 4 cut(s) | 169, 297, 906, 909 |
| BlsI | GCNGC | 4 cut(s) | 170, 298, 907, 910 |
| Bme1390I | CCNGG | 2 cut(s) | 248, 398 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 50 |
| BmeT110I | CYCGRG | 1 cut(s) | 1082 |
| BmgT120I | GGNCC | 1 cut(s) | 249 |
| BmiI | GGNNCC | 1 cut(s) | 245 |
| BmrFI | CCNGG | 2 cut(s) | 248, 398 |
| BmrI | ACTGGG | 1 cut(s) | 823 |
| BmsI | GCATC | 4 cut(s) | 356, 705, 892, 1132 |
| BmtI | GCTAGC | 1 cut(s) | 32 |
| BmuI | ACTGGG | 1 cut(s) | 823 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1065, 1097, 1089, 1121 |
| BpuEI | CTTGAG | 2 cut(s) | 659, 704 |
| BpuMI | CCSGG | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 4 cut(s) | 397, 444, 862, 1016 |
| BsaWI | WCCGGW | 2 cut(s) | 76, 103 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 635, 665 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 222, 265, 834, 965 |
| Bse118I | RCCGGY | 1 cut(s) | 76 |
| Bse1I | ACTGG | 3 cut(s) | 114, 810, 829 |
| Bse3DI | GCAATG | 1 cut(s) | 315 |
| BseBI | CCWGG | 1 cut(s) | 398 |
| BseDI | CCNNGG | 4 cut(s) | 397, 444, 862, 1016 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 222, 265, 834, 965 |
| BseMI | GCAATG | 1 cut(s) | 315 |
| BseMII | CTCAG | 4 cut(s) | 182, 639, 905, 968 |
| BseNI | ACTGG | 3 cut(s) | 114, 810, 829 |
| BseRI | GAGGAG | 1 cut(s) | 656 |
| BseXI | GCAGC | 4 cut(s) | 155, 283, 892, 895 |
| BseYI | CCCAGC | 1 cut(s) | 602 |
| Bsh1236I | CGCG | 1 cut(s) | 1134 |
| Bsh1285I | CGRYCG | 2 cut(s) | 108, 1138 |
| BshFI | GGCC | 2 cut(s) | 251, 809 |
| BshTI | ACCGGT | 1 cut(s) | 76 |
| BsiEI | CGRYCG | 2 cut(s) | 108, 1138 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1082 |
| BsiSI | CCGG | 3 cut(s) | 77, 104, 247 |
| BsiWI | CGTACG | 1 cut(s) | 611 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 222, 265, 834, 965 |
| BsmAI | GTCTC | 1 cut(s) | 841 |
| BsmI | GAATGC | 1 cut(s) | 349 |
| BsnI | GGCC | 2 cut(s) | 251, 809 |
| BsoBI | CYCGRG | 1 cut(s) | 1082 |
| Bsp143I | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| Bsp19I | CCATGG | 3 cut(s) | 444, 862, 1016 |
| BspACI | CCGC | 2 cut(s) | 32, 1134 |
| BspANI | GGCC | 2 cut(s) | 251, 809 |
| BspCNI | CTCAG | 4 cut(s) | 183, 640, 904, 967 |
| BspFNI | CGCG | 1 cut(s) | 1134 |
| BspLI | GGNNCC | 1 cut(s) | 245 |
| BspMI | ACCTGC | 1 cut(s) | 331 |
| BspOI | GCTAGC | 1 cut(s) | 32 |
| BspPI | GGATC | 3 cut(s) | 366, 396, 976 |
| BsrDI | GCAATG | 1 cut(s) | 315 |
| BsrFI | RCCGGY | 1 cut(s) | 76 |
| BsrI | ACTGG | 3 cut(s) | 114, 810, 829 |
| BssAI | RCCGGY | 1 cut(s) | 76 |
| BssECI | CCNNGG | 4 cut(s) | 397, 444, 862, 1016 |
| BssMI | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| BssNAI | GTATAC | 1 cut(s) | 441 |
| BssT1I | CCWWGG | 3 cut(s) | 444, 862, 1016 |
| Bst1107I | GTATAC | 1 cut(s) | 441 |
| Bst2UI | CCWGG | 1 cut(s) | 398 |
| Bst6I | CTCTTC | 1 cut(s) | 949 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 213 |
| BstDEI | CTNAG | 6 cut(s) | 191, 539, 648, 891, 954, 998 |
| BstDSI | CCRYGG | 3 cut(s) | 444, 862, 1016 |
| BstFNI | CGCG | 1 cut(s) | 1134 |
| BstKTI | GATC | 6 cut(s) | 285, 374, 391, 756, 971, 978 |
| BstMAI | GTCTC | 1 cut(s) | 841 |
| BstMBI | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| BstMCI | CGRYCG | 2 cut(s) | 108, 1138 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 208, 296, 806, 896, 905 |
| BstNI | CCWGG | 1 cut(s) | 398 |
| BstNSI | RCATGY | 2 cut(s) | 215, 436 |
| BstSCI | CCNGG | 2 cut(s) | 246, 396 |
| BstSFI | CTRYAG | 3 cut(s) | 19, 454, 768 |
| BstUI | CGCG | 1 cut(s) | 1134 |
| BstV1I | GCAGC | 4 cut(s) | 155, 283, 892, 895 |
| BstX2I | RGATCY | 3 cut(s) | 371, 388, 975 |
| BstYI | RGATCY | 3 cut(s) | 371, 388, 975 |
| BstZ17I | GTATAC | 1 cut(s) | 441 |
| BsuRI | GGCC | 2 cut(s) | 251, 809 |
| BtgI | CCRYGG | 3 cut(s) | 444, 862, 1016 |
| BtsIMutI | CAGTG | 2 cut(s) | 666, 817 |
| BveI | ACCTGC | 1 cut(s) | 331 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1120 |
| Cfr10I | RCCGGY | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 1 cut(s) | 249 |
| Csp6I | GTAC | 3 cut(s) | 573, 612, 1013 |
| CspAI | ACCGGT | 1 cut(s) | 76 |
| CviAII | CATG | 7 cut(s) | 212, 433, 445, 757, 863, 931, 1017 |
| CviQI | GTAC | 3 cut(s) | 573, 612, 1013 |
| DdeI | CTNAG | 6 cut(s) | 191, 539, 648, 891, 954, 998 |
| DpnI | GATC | 6 cut(s) | 284, 373, 390, 755, 970, 977 |
| DpnII | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| DraI | TTTAAA | 1 cut(s) | 1035 |
| DriI | GACNNNNNGTC | 1 cut(s) | 50 |
| EaeI | YGGCCR | 1 cut(s) | 807 |
| Eam1104I | CTCTTC | 1 cut(s) | 949 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 50 |
| EarI | CTCTTC | 1 cut(s) | 949 |
| Eco130I | CCWWGG | 3 cut(s) | 444, 862, 1016 |
| Eco88I | CYCGRG | 1 cut(s) | 1082 |
| EcoRII | CCWGG | 1 cut(s) | 396 |
| EcoT14I | CCWWGG | 3 cut(s) | 444, 862, 1016 |
| EcoT22I | ATGCAT | 1 cut(s) | 349 |
| ErhI | CCWWGG | 3 cut(s) | 444, 862, 1016 |
| FaeI | CATG | 7 cut(s) | 215, 436, 448, 760, 866, 934, 1020 |
| FatI | CATG | 7 cut(s) | 211, 432, 444, 756, 862, 930, 1016 |
| FauNDI | CATATG | 1 cut(s) | 292 |
| FbaI | TGATCA | 1 cut(s) | 753 |
| FblI | GTMKAC | 2 cut(s) | 108, 440 |
| Fnu4HI | GCNGC | 4 cut(s) | 169, 297, 906, 909 |
| Fsp4HI | GCNGC | 4 cut(s) | 169, 297, 906, 909 |
| FspBI | CTAG | 3 cut(s) | 29, 570, 1007 |
| GluI | GCNGC | 4 cut(s) | 169, 297, 906, 909 |
| GsaI | CCCAGC | 1 cut(s) | 606 |
| HaeIII | GGCC | 2 cut(s) | 251, 809 |
| HapII | CCGG | 3 cut(s) | 77, 104, 247 |
| Hin1II | CATG | 7 cut(s) | 215, 436, 448, 760, 866, 934, 1020 |
| HincII | GTYRAC | 2 cut(s) | 109, 618 |
| HindII | GTYRAC | 2 cut(s) | 109, 618 |
| HindIII | AAGCTT | 1 cut(s) | 635 |
| HinfI | GANTC | 5 cut(s) | 45, 100, 182, 482, 644 |
| HpaII | CCGG | 3 cut(s) | 77, 104, 247 |
| HphI | GGTGA | 1 cut(s) | 724 |
| Hpy166II | GTNNAC | 4 cut(s) | 109, 441, 618, 1004 |
| Hpy188I | TCNGA | 4 cut(s) | 150, 192, 649, 894 |
| Hpy8I | GTNNAC | 4 cut(s) | 109, 441, 618, 1004 |
| Hpy99I | CGWCG | 6 cut(s) | 53, 56, 59, 92, 95, 314 |
| HpyAV | CCTTC | 2 cut(s) | 220, 531 |
| HpyCH4IV | ACGT | 2 cut(s) | 93, 614 |
| HpyCH4V | TGCA | 8 cut(s) | 211, 290, 320, 326, 347, 470, 790, 1123 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 208, 296, 806, 896, 905 |
| HpyF3I | CTNAG | 6 cut(s) | 191, 539, 648, 891, 954, 998 |
| HpySE526I | ACGT | 2 cut(s) | 93, 614 |
| Hsp92II | CATG | 7 cut(s) | 215, 436, 448, 760, 866, 934, 1020 |
| Ksp22I | TGATCA | 1 cut(s) | 753 |
| Kzo9I | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| Lsp1109I | GCAGC | 4 cut(s) | 155, 283, 892, 895 |
| LweI | GCATC | 4 cut(s) | 356, 705, 892, 1132 |
| MaeI | CTAG | 3 cut(s) | 29, 570, 1007 |
| MaeII | ACGT | 2 cut(s) | 93, 614 |
| MaeIII | GTNAC | 1 cut(s) | 812 |
| MalI | GATC | 6 cut(s) | 284, 373, 390, 755, 970, 977 |
| MboI | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| MboII | GAAGA | 5 cut(s) | 80, 83, 564, 748, 936 |
| MflI | RGATCY | 3 cut(s) | 371, 388, 975 |
| MlsI | TGGCCA | 1 cut(s) | 809 |
| MluCI | AATT | 7 cut(s) | 263, 305, 327, 402, 555, 671, 785 |
| MluNI | TGGCCA | 1 cut(s) | 809 |
| MlyI | GAGTC | 2 cut(s) | 39, 653 |
| MnlI | CCTC | 8 cut(s) | 310, 379, 556, 634, 703, 772, 952, 1078 |
| Mox20I | TGGCCA | 1 cut(s) | 809 |
| Mph1103I | ATGCAT | 1 cut(s) | 349 |
| MscI | TGGCCA | 1 cut(s) | 809 |
| MseI | TTAA | 3 cut(s) | 411, 507, 1034 |
| MslI | CAYNNNNRTG | 1 cut(s) | 585 |
| Msp20I | TGGCCA | 1 cut(s) | 809 |
| MspA1I | CMGCKG | 1 cut(s) | 773 |
| MspI | CCGG | 3 cut(s) | 77, 104, 247 |
| MspR9I | CCNGG | 2 cut(s) | 248, 398 |
| Mva1269I | GAATGC | 1 cut(s) | 349 |
| MvaI | CCWGG | 1 cut(s) | 398 |
| MvnI | CGCG | 1 cut(s) | 1134 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 208, 296, 806, 896, 905 |
| NciI | CCSGG | 1 cut(s) | 248 |
| NcoI | CCATGG | 3 cut(s) | 444, 862, 1016 |
| NdeI | CATATG | 1 cut(s) | 292 |
| NdeII | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| NheI | GCTAGC | 1 cut(s) | 28 |
| NlaIII | CATG | 7 cut(s) | 215, 436, 448, 760, 866, 934, 1020 |
| NlaIV | GGNNCC | 1 cut(s) | 245 |
| NmuCI | GTSAC | 1 cut(s) | 812 |
| NsiI | ATGCAT | 1 cut(s) | 349 |
| NspI | RCATGY | 2 cut(s) | 215, 436 |
| PaeI | GCATGC | 1 cut(s) | 215 |
| PaeR7I | CTCGAG | 1 cut(s) | 1082 |
| PaqCI | CACCTGC | 1 cut(s) | 331 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 54, 434 |
| PctI | GAATGC | 1 cut(s) | 349 |
| PfeI | GAWTC | 3 cut(s) | 100, 182, 482 |
| Pfl23II | CGTACG | 1 cut(s) | 611 |
| PflFI | GACNNNGTC | 1 cut(s) | 937 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 265 |
| PinAI | ACCGGT | 1 cut(s) | 76 |
| PkrI | GCNGC | 4 cut(s) | 170, 298, 907, 910 |
| PleI | GAGTC | 2 cut(s) | 39, 652 |
| PpsI | GAGTC | 2 cut(s) | 39, 652 |
| PsiI | TTATAA | 1 cut(s) | 630 |
| Psp6I | CCWGG | 1 cut(s) | 396 |
| PspFI | CCCAGC | 1 cut(s) | 602 |
| PspGI | CCWGG | 1 cut(s) | 396 |
| PspLI | CGTACG | 1 cut(s) | 611 |
| PspN4I | GGNNCC | 1 cut(s) | 245 |
| PspPI | GGNCC | 1 cut(s) | 249 |
| PspXI | VCTCGAGB | 1 cut(s) | 1082 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1120 |
| PsuI | RGATCY | 3 cut(s) | 371, 388, 975 |
| PsyI | GACNNNGTC | 1 cut(s) | 937 |
| PvuII | CAGCTG | 1 cut(s) | 773 |
| RsaI | GTAC | 3 cut(s) | 574, 613, 1014 |
| RsaNI | GTAC | 3 cut(s) | 573, 612, 1013 |
| RseI | CAYNNNNRTG | 1 cut(s) | 585 |
| SalI | GTCGAC | 1 cut(s) | 107 |
| SaqAI | TTAA | 3 cut(s) | 411, 507, 1034 |
| SatI | GCNGC | 4 cut(s) | 169, 297, 906, 909 |
| Sau3AI | GATC | 6 cut(s) | 282, 371, 388, 753, 968, 975 |
| Sau96I | GGNCC | 1 cut(s) | 249 |
| SchI | GAGTC | 2 cut(s) | 39, 653 |
| ScrFI | CCNGG | 2 cut(s) | 248, 398 |
| SfaNI | GCATC | 4 cut(s) | 356, 705, 892, 1132 |
| SfcI | CTRYAG | 3 cut(s) | 19, 454, 768 |
| Sfr274I | CTCGAG | 1 cut(s) | 1082 |
| SlaI | CTCGAG | 1 cut(s) | 1082 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 3 cut(s) | 638, 719, 1082 |
| SmoI | CTYRAG | 3 cut(s) | 638, 719, 1082 |
| SphI | GCATGC | 1 cut(s) | 215 |
| Sse9I | AATT | 7 cut(s) | 263, 305, 327, 402, 555, 671, 785 |
| SsiI | CCGC | 2 cut(s) | 32, 1134 |
| SspMI | CTAG | 3 cut(s) | 29, 570, 1007 |
| StyD4I | CCNGG | 2 cut(s) | 246, 396 |
| StyI | CCWWGG | 3 cut(s) | 444, 862, 1016 |
| TaiI | ACGT | 2 cut(s) | 96, 617 |
| TasI | AATT | 7 cut(s) | 263, 305, 327, 402, 555, 671, 785 |
| TfiI | GAWTC | 3 cut(s) | 100, 182, 482 |
| Tru1I | TTAA | 3 cut(s) | 411, 507, 1034 |
| Tru9I | TTAA | 3 cut(s) | 411, 507, 1034 |
| TscAI | CASTG | 2 cut(s) | 673, 817 |
| TseFI | GTSAC | 1 cut(s) | 812 |
| TseI | GCWGC | 4 cut(s) | 168, 296, 905, 908 |
| Tsp45I | GTSAC | 1 cut(s) | 812 |
| TspDTI | ATGAA | 6 cut(s) | 513, 521, 603, 936, 1053, 1076 |
| TspGWI | ACGGA | 2 cut(s) | 353, 1110 |
| TspRI | CASTG | 2 cut(s) | 673, 817 |
| Tth111I | GACNNNGTC | 1 cut(s) | 937 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 265 |
| XapI | RAATTY | 3 cut(s) | 305, 555, 671 |
| XceI | RCATGY | 2 cut(s) | 215, 436 |
| XhoI | CTCGAG | 1 cut(s) | 1082 |
| XmiI | GTMKAC | 2 cut(s) | 108, 440 |
| XspI | CTAG | 3 cut(s) | 29, 570, 1007 |
| Zsp2I | ATGCAT | 1 cut(s) | 349 |