RLG00000032521

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
16082153 .. 16087002
4850 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032521

Sequence Viewer

Length: 1146 bp
ATGGGAGTTCCAGCTTTCTACAGATGGCTAGCGGAGAAGTATCGACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCGGTTGTAATCGACGACGTTTCGATTCCGGTCGACACCAGTAAGCCAAACCCTAATGGCGAGTATGACAATCTGATTGTGCTTGGTAATGGCTGCGATTGTTTTGATTCAGCTCTGAGTTATTGGCTTTGGTTGCATGCCCTGAAAGGGAAGGGAAACGGGTTCTGGTTCCGGGCCTACTGCCAAGAATTGGTTATGGTTATGATGATCTCTGCATATGCTGCCTCGAAATTCGACGACATTGCACCTGCAATTTCACTCACGGAGAATGCATCAAAGCACTTCAATAAGATGAGATCCAAACATAATGAGGATCTATGCCTGGGAATTGATGTTAAACAGGGTGGATATTCGGGCATGTCGTATACCATGGACTTCTATAGCAAAGAAAATGCAAGACCAGATGATTCAACCATTGAATGTAATGGTTTTAAGATAGGTCAGCCTTCATATTTTCATTCTCTTAGTCAAAATGGAAGAATTTATGAGGAAGCTAGTACCAAGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACGTTGACACTTGCTTATAAAAAGCTTGAGGAGTCTGAGTATTCTGCTTGGAACACTGAATTTCAAAAAGCAAAATCATCTATCGGGGTTGATAGGGAGGTGATGCTCAAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAAGGGCTGTGATGGCCAGTGACTTTGCTATTGCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGGCTGATGCTGCTGCTTCCAAGAATACTTCGACCATGACAAAGTCCTCTTCATCATCTCAGCCCAATCGTGGATCACAGATCTCTAAAGAGCTGTGTTCCCTTAGTAAACTAGCAGTACCATGGTGGTATGGGGCTTTAAATGAAAACTTGCCTACAAACTCGATGAACCACAAAGGAGAAAAGCTCGAGGAAAAGAACGGAGAAAAGCTCAACAAACAGACCCTGCATCAATGTCGCGGTCGTCTTTAG

Protein Analysis

382

Amino Acids

42.99

Weight (kDa)

6.77

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 191 - 264 2.6e-07 P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C PF16212 268 - 308 5.6e-16 Phospholipid-translocating P-type ATPase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 265
AccI GTMKAC 2 cut(s) 108, 440
AccII CGCG 1 cut(s) 1134
AciI CCGC 2 cut(s) 32, 1134
AclWI GGATC 3 cut(s) 366, 396, 976
AcoI YGGCCR 1 cut(s) 807
AcsI RAATTY 3 cut(s) 305, 555, 671
AfaI GTAC 3 cut(s) 574, 613, 1014
AfiI CCNNNNNNNGG 4 cut(s) 222, 265, 834, 965
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 5 cut(s) 361, 486, 494, 586, 677
AhdI GACNNNNNGTC 1 cut(s) 50
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 9 cut(s) 14, 188, 569, 602, 637, 773, 988, 1081, 1105
AluI AGCT 9 cut(s) 14, 188, 569, 602, 637, 773, 988, 1081, 1105
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 3 cut(s) 366, 396, 976
AlwNI CAGNNNCTG 1 cut(s) 1120
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 2 cut(s) 249, 807
ApeKI GCWGC 4 cut(s) 168, 296, 905, 908
ApoI RAATTY 3 cut(s) 305, 555, 671
AsiGI ACCGGT 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 724
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 1082
BalI TGGCCA 1 cut(s) 809
BbvI GCAGC 4 cut(s) 155, 283, 892, 895
BccI CCATC 4 cut(s) 18, 733, 799, 889
BcgI CGANNNNNNTGC 4 cut(s) 299, 333, 1112, 1146
BciT130I CCWGG 1 cut(s) 398
BclI TGATCA 1 cut(s) 753
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 3 cut(s) 29, 570, 1007
BfmI CTRYAG 3 cut(s) 19, 454, 768
BfuAI ACCTGC 1 cut(s) 331
BglII AGATCT 1 cut(s) 975
BisI GCNGC 4 cut(s) 169, 297, 906, 909
BlsI GCNGC 4 cut(s) 170, 298, 907, 910
Bme1390I CCNGG 2 cut(s) 248, 398
BmeRI GACNNNNNGTC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 248, 398
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 4 cut(s) 356, 705, 892, 1132
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 823
BplI GAGNNNNNCTC 4 cut(s) 1065, 1097, 1089, 1121
BpuEI CTTGAG 2 cut(s) 659, 704
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 397, 444, 862, 1016
BsaWI WCCGGW 2 cut(s) 76, 103
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 265, 834, 965
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 3 cut(s) 114, 810, 829
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 4 cut(s) 397, 444, 862, 1016
BseLI CCNNNNNNNGG 4 cut(s) 222, 265, 834, 965
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 4 cut(s) 182, 639, 905, 968
BseNI ACTGG 3 cut(s) 114, 810, 829
BseRI GAGGAG 1 cut(s) 656
BseXI GCAGC 4 cut(s) 155, 283, 892, 895
BseYI CCCAGC 1 cut(s) 602
Bsh1236I CGCG 1 cut(s) 1134
Bsh1285I CGRYCG 2 cut(s) 108, 1138
BshFI GGCC 2 cut(s) 251, 809
BshTI ACCGGT 1 cut(s) 76
BsiEI CGRYCG 2 cut(s) 108, 1138
BsiHKCI CYCGRG 1 cut(s) 1082
BsiSI CCGG 3 cut(s) 77, 104, 247
BsiWI CGTACG 1 cut(s) 611
BslI CCNNNNNNNGG 4 cut(s) 222, 265, 834, 965
BsmAI GTCTC 1 cut(s) 841
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 251, 809
BsoBI CYCGRG 1 cut(s) 1082
Bsp143I GATC 6 cut(s) 282, 371, 388, 753, 968, 975
Bsp19I CCATGG 3 cut(s) 444, 862, 1016
BspACI CCGC 2 cut(s) 32, 1134
BspANI GGCC 2 cut(s) 251, 809
BspCNI CTCAG 4 cut(s) 183, 640, 904, 967
BspFNI CGCG 1 cut(s) 1134
BspLI GGNNCC 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 3 cut(s) 366, 396, 976
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 3 cut(s) 114, 810, 829
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 4 cut(s) 397, 444, 862, 1016
BssMI GATC 6 cut(s) 282, 371, 388, 753, 968, 975
BssNAI GTATAC 1 cut(s) 441
BssT1I CCWWGG 3 cut(s) 444, 862, 1016
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 949
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 30, 213
BstDEI CTNAG 6 cut(s) 191, 539, 648, 891, 954, 998
BstDSI CCRYGG 3 cut(s) 444, 862, 1016
BstFNI CGCG 1 cut(s) 1134
BstKTI GATC 6 cut(s) 285, 374, 391, 756, 971, 978
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 6 cut(s) 282, 371, 388, 753, 968, 975
BstMCI CGRYCG 2 cut(s) 108, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 208, 296, 806, 896, 905
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 2 cut(s) 215, 436
BstSCI CCNGG 2 cut(s) 246, 396
BstSFI CTRYAG 3 cut(s) 19, 454, 768
BstUI CGCG 1 cut(s) 1134
BstV1I GCAGC 4 cut(s) 155, 283, 892, 895
BstX2I RGATCY 3 cut(s) 371, 388, 975
BstYI RGATCY 3 cut(s) 371, 388, 975
BstZ17I GTATAC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 251, 809
BtgI CCRYGG 3 cut(s) 444, 862, 1016
BtsIMutI CAGTG 2 cut(s) 666, 817
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 30, 213
CaiI CAGNNNCTG 1 cut(s) 1120
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 573, 612, 1013
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 7 cut(s) 212, 433, 445, 757, 863, 931, 1017
CviQI GTAC 3 cut(s) 573, 612, 1013
DdeI CTNAG 6 cut(s) 191, 539, 648, 891, 954, 998
DpnI GATC 6 cut(s) 284, 373, 390, 755, 970, 977
DpnII GATC 6 cut(s) 282, 371, 388, 753, 968, 975
DraI TTTAAA 1 cut(s) 1035
DriI GACNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 949
Eam1105I GACNNNNNGTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 949
Eco130I CCWWGG 3 cut(s) 444, 862, 1016
Eco88I CYCGRG 1 cut(s) 1082
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 3 cut(s) 444, 862, 1016
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 3 cut(s) 444, 862, 1016
FaeI CATG 7 cut(s) 215, 436, 448, 760, 866, 934, 1020
FatI CATG 7 cut(s) 211, 432, 444, 756, 862, 930, 1016
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 753
FblI GTMKAC 2 cut(s) 108, 440
Fnu4HI GCNGC 4 cut(s) 169, 297, 906, 909
Fsp4HI GCNGC 4 cut(s) 169, 297, 906, 909
FspBI CTAG 3 cut(s) 29, 570, 1007
GluI GCNGC 4 cut(s) 169, 297, 906, 909
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 2 cut(s) 251, 809
HapII CCGG 3 cut(s) 77, 104, 247
Hin1II CATG 7 cut(s) 215, 436, 448, 760, 866, 934, 1020
HincII GTYRAC 2 cut(s) 109, 618
HindII GTYRAC 2 cut(s) 109, 618
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 45, 100, 182, 482, 644
HpaII CCGG 3 cut(s) 77, 104, 247
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 4 cut(s) 109, 441, 618, 1004
Hpy188I TCNGA 4 cut(s) 150, 192, 649, 894
Hpy8I GTNNAC 4 cut(s) 109, 441, 618, 1004
Hpy99I CGWCG 6 cut(s) 53, 56, 59, 92, 95, 314
HpyAV CCTTC 2 cut(s) 220, 531
HpyCH4IV ACGT 2 cut(s) 93, 614
HpyCH4V TGCA 8 cut(s) 211, 290, 320, 326, 347, 470, 790, 1123
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 296, 806, 896, 905
HpyF3I CTNAG 6 cut(s) 191, 539, 648, 891, 954, 998
HpySE526I ACGT 2 cut(s) 93, 614
Hsp92II CATG 7 cut(s) 215, 436, 448, 760, 866, 934, 1020
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 6 cut(s) 282, 371, 388, 753, 968, 975
Lsp1109I GCAGC 4 cut(s) 155, 283, 892, 895
LweI GCATC 4 cut(s) 356, 705, 892, 1132
MaeI CTAG 3 cut(s) 29, 570, 1007
MaeII ACGT 2 cut(s) 93, 614
MaeIII GTNAC 1 cut(s) 812
MalI GATC 6 cut(s) 284, 373, 390, 755, 970, 977
MboI GATC 6 cut(s) 282, 371, 388, 753, 968, 975
MboII GAAGA 5 cut(s) 80, 83, 564, 748, 936
MflI RGATCY 3 cut(s) 371, 388, 975
MlsI TGGCCA 1 cut(s) 809
MluCI AATT 7 cut(s) 263, 305, 327, 402, 555, 671, 785
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 2 cut(s) 39, 653
MnlI CCTC 8 cut(s) 310, 379, 556, 634, 703, 772, 952, 1078
Mox20I TGGCCA 1 cut(s) 809
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 1 cut(s) 809
MseI TTAA 3 cut(s) 411, 507, 1034
MslI CAYNNNNRTG 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 3 cut(s) 77, 104, 247
MspR9I CCNGG 2 cut(s) 248, 398
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 1 cut(s) 1134
MwoI GCNNNNNNNGC 5 cut(s) 208, 296, 806, 896, 905
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 3 cut(s) 444, 862, 1016
NdeI CATATG 1 cut(s) 292
NdeII GATC 6 cut(s) 282, 371, 388, 753, 968, 975
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 7 cut(s) 215, 436, 448, 760, 866, 934, 1020
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 812
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 2 cut(s) 215, 436
PaeI GCATGC 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 1082
PaqCI CACCTGC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 434
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 100, 182, 482
Pfl23II CGTACG 1 cut(s) 611
PflFI GACNNNGTC 1 cut(s) 937
PflMI CCANNNNNTGG 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 4 cut(s) 170, 298, 907, 910
PleI GAGTC 2 cut(s) 39, 652
PpsI GAGTC 2 cut(s) 39, 652
PsiI TTATAA 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 396
PspLI CGTACG 1 cut(s) 611
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 249
PspXI VCTCGAGB 1 cut(s) 1082
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 3 cut(s) 371, 388, 975
PsyI GACNNNGTC 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 3 cut(s) 574, 613, 1014
RsaNI GTAC 3 cut(s) 573, 612, 1013
RseI CAYNNNNRTG 1 cut(s) 585
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 411, 507, 1034
SatI GCNGC 4 cut(s) 169, 297, 906, 909
Sau3AI GATC 6 cut(s) 282, 371, 388, 753, 968, 975
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 39, 653
ScrFI CCNGG 2 cut(s) 248, 398
SfaNI GCATC 4 cut(s) 356, 705, 892, 1132
SfcI CTRYAG 3 cut(s) 19, 454, 768
Sfr274I CTCGAG 1 cut(s) 1082
SlaI CTCGAG 1 cut(s) 1082
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 3 cut(s) 638, 719, 1082
SmoI CTYRAG 3 cut(s) 638, 719, 1082
SphI GCATGC 1 cut(s) 215
Sse9I AATT 7 cut(s) 263, 305, 327, 402, 555, 671, 785
SsiI CCGC 2 cut(s) 32, 1134
SspMI CTAG 3 cut(s) 29, 570, 1007
StyD4I CCNGG 2 cut(s) 246, 396
StyI CCWWGG 3 cut(s) 444, 862, 1016
TaiI ACGT 2 cut(s) 96, 617
TasI AATT 7 cut(s) 263, 305, 327, 402, 555, 671, 785
TfiI GAWTC 3 cut(s) 100, 182, 482
Tru1I TTAA 3 cut(s) 411, 507, 1034
Tru9I TTAA 3 cut(s) 411, 507, 1034
TscAI CASTG 2 cut(s) 673, 817
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 4 cut(s) 168, 296, 905, 908
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 6 cut(s) 513, 521, 603, 936, 1053, 1076
TspGWI ACGGA 2 cut(s) 353, 1110
TspRI CASTG 2 cut(s) 673, 817
Tth111I GACNNNGTC 1 cut(s) 937
Van91I CCANNNNNTGG 1 cut(s) 265
XapI RAATTY 3 cut(s) 305, 555, 671
XceI RCATGY 2 cut(s) 215, 436
XhoI CTCGAG 1 cut(s) 1082
XmiI GTMKAC 2 cut(s) 108, 440
XspI CTAG 3 cut(s) 29, 570, 1007
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.