Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

1434890 .. 1459099

Gene Structure 24210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0018800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCAGAAGAGAAGATGATTAGACCTGTTAGCAACTCAATGATCAATAATGGGAATGAACTAAACAGCTGCTCCATAAACTCGATCTCTGGATCAGTGATTGAAGAAGCTTTTCCTATGAATGGAGGAGATGGCCAATACAGCTATGGTAAAAACTCCAATCGTCAGAAAGAGGTTGCAGTTGCTGCCAAGGAACTTGTAGACAAGGCAATTGTAGAAAAGCTCGACGTGAAATTCTTGTTATCATCTTCCACCACCTTTCAGTTTGCAGATCTGGGTTGCTCTATAGGGCCTAATACATTTTTGTCTGTCGAAAACATACTCCAAGCTGTGAAATTCAAGTATCATAGCCAAGGGTGGCGATGTTCTGATCAAATCCTTGAATTTCAAGTTTTTTTCAGTGACCATACTTCAAATGACTTCAATATGCTTTTCAAATCCCTCCCTAAGAACAGACAGTACTATGCCGCGGGTGTGCCTGGTTCTTTTTATGGTCGCCTATTTCCTAAAGCTTCTATTCATATCTTTCATGCTTCTTATGCCATTCATTGGCTTTCCAAAGTACCAAAAGAGGTAGGGGACAGAAACAGTCCAGCTTGGAATAAAGGACGAATCCATTACCTAAATTCGACAGATGAAGTAAAAAGGGCTTTTGAAGTTCAATATGCTGAGGACATGGAGTGCTTCCTGCAAGCCAGGGCAGAAGAGATTGTGCGTGGAGGACTCATGGTATTTATCATTCCAGGCATCCCTCATGGAATCCCTCATTCAGATGCTCTGGCAAATGTAACCTATCAACTCTTAGAATCTTGCCTCATGGACATGGTGAGGAAGGGAGTTATTAGCGAAGAGAAAGTAGATTCATTCAACATGCCTATATATTCCATGACTCCTCAAGAACTTGAAGATGCTGTGAAACAGAATGGAGGCTTTAGCGTAGAGATAATGACAAACTTACCTCATCCCTTGGTAGATGACACTCTTTCAGTACCGCAACTACTTGCCTCTCACCTGAGAACTGGCGTGGAGGGGATGGTCAAGAAGCAATTTGGAGAAGAAATATTAGATGAGCTCTTCGACTTGTATCGGGAAAAATGTGAGCATGATGTGCTCAACTTTCTTGCTGTGCTTGGACACAACTTTATTGTTGTTCTTAGACGTAAGGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

390

Amino Acids

43.87

Weight (kDa)

5.6

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	82 - 386	1.5e-99	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	470
AciI	CCGC	3 cut(s)	468, 470, 992
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	4 cut(s)	233, 335, 383, 625
AfaI	GTAC	3 cut(s)	461, 564, 990
AfiI	CCNNNNNNNGG	2 cut(s)	122, 549
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	478, 695, 742
AluBI	AGCT	8 cut(s)	69, 110, 144, 223, 329, 512, 596, 1072
AluI	AGCT	8 cut(s)	69, 110, 144, 223, 329, 512, 596, 1072
Alw21I	GWGCWC	2 cut(s)	1074, 1113
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	133, 290
ApeKI	GCWGC	2 cut(s)	69, 185
ApoI	RAATTY	4 cut(s)	233, 335, 383, 625
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	838, 1001
BalI	TGGCCA	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	1074
Bbv12I	GWGCWC	2 cut(s)	1074, 1113
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	56, 172
BccI	CCATC	2 cut(s)	125, 1027
BciT130I	CCWGG	3 cut(s)	480, 697, 744
BclI	TGATCA	2 cut(s)	42, 370
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	70, 186, 468
BlsI	GCNGC	3 cut(s)	71, 187, 469
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	3 cut(s)	480, 697, 744
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	3 cut(s)	480, 697, 744
BmsI	GCATC	3 cut(s)	756, 763, 898
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	879
BsaJI	CCNNGG	5 cut(s)	189, 352, 468, 696, 966
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 549
Bse1I	ACTGG	1 cut(s)	1024
BseBI	CCWGG	3 cut(s)	480, 697, 744
BseDI	CCNNGG	5 cut(s)	189, 352, 468, 696, 966
BseGI	GGATG	3 cut(s)	747, 961, 1038
BseLI	CCNNNNNNNGG	2 cut(s)	122, 549
BseMII	CTCAG	2 cut(s)	660, 1004
BseNI	ACTGG	1 cut(s)	1024
BseRI	GAGGAG	2 cut(s)	141, 882
BseXI	GCAGC	2 cut(s)	56, 172
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	135, 292
BsiHKAI	GWGCWC	2 cut(s)	1074, 1113
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	122, 549
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	135, 292
Bsp1286I	GDGCHC	2 cut(s)	1074, 1113
Bsp143I	GATC	5 cut(s)	42, 84, 92, 271, 370
BspACI	CCGC	3 cut(s)	468, 470, 992
BspANI	GGCC	2 cut(s)	135, 292
BspCNI	CTCAG	2 cut(s)	661, 1005
BspFNI	CGCG	1 cut(s)	470
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	1079
BsrI	ACTGG	1 cut(s)	1024
BssECI	CCNNGG	5 cut(s)	189, 352, 468, 696, 966
BssMI	GATC	5 cut(s)	42, 84, 92, 271, 370
BssT1I	CCWWGG	3 cut(s)	189, 352, 966
Bst2UI	CCWGG	3 cut(s)	480, 697, 744
Bst4CI	ACNGT	2 cut(s)	459, 590
Bst6I	CTCTTC	4 cut(s)	3, 699, 843, 1079
BstAPI	GCANNNNNTGC	2 cut(s)	185, 1108
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	5 cut(s)	447, 669, 802, 1013, 1154
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	747, 961, 1038
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	5 cut(s)	45, 87, 95, 274, 373
BstMBI	GATC	5 cut(s)	42, 84, 92, 271, 370
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 185, 539, 1108
BstNI	CCWGG	3 cut(s)	480, 697, 744
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	3 cut(s)	478, 695, 742
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	56, 172
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	135, 292
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	747, 961, 1038
BtsIMutI	CAGTG	2 cut(s)	102, 406
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	290
Cfr42I	CCGCGG	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	460, 563, 989
CviAII	CATG	9 cut(s)	530, 676, 727, 755, 817, 823, 871, 886, 1103
CviQI	GTAC	3 cut(s)	460, 563, 989
DdeI	CTNAG	5 cut(s)	447, 669, 802, 1013, 1154
DpnI	GATC	5 cut(s)	44, 86, 94, 273, 372
DpnII	GATC	5 cut(s)	42, 84, 92, 271, 370
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	4 cut(s)	3, 699, 843, 1079
EarI	CTCTTC	4 cut(s)	3, 699, 843, 1079
Ecl136II	GAGCTC	1 cut(s)	1072
Eco130I	CCWWGG	3 cut(s)	189, 352, 966
Eco24I	GRGCYC	1 cut(s)	1074
Eco53kI	GAGCTC	1 cut(s)	1072
EcoICRI	GAGCTC	1 cut(s)	1072
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	3 cut(s)	478, 695, 742
EcoT14I	CCWWGG	3 cut(s)	189, 352, 966
EcoT38I	GRGCYC	1 cut(s)	1074
ErhI	CCWWGG	3 cut(s)	189, 352, 966
FaeI	CATG	9 cut(s)	533, 679, 730, 758, 820, 826, 874, 889, 1106
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	9 cut(s)	529, 675, 726, 754, 816, 822, 870, 885, 1102
FauI	CCCGC	1 cut(s)	463
FbaI	TGATCA	2 cut(s)	42, 370
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	70, 186, 468
FokI	GGATG	3 cut(s)	734, 948, 1045
FriOI	GRGCYC	1 cut(s)	1074
Fsp4HI	GCNGC	3 cut(s)	70, 186, 468
GluI	GCNGC	3 cut(s)	70, 186, 468
HaeIII	GGCC	2 cut(s)	135, 292
Hin1II	CATG	9 cut(s)	533, 679, 730, 758, 820, 826, 874, 889, 1106
HindIII	AAGCTT	2 cut(s)	108, 510
HinfI	GANTC	6 cut(s)	612, 723, 759, 806, 860, 889
HphI	GGTGA	2 cut(s)	838, 1001
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	168, 370, 772
Hpy188III	TCNNGA	4 cut(s)	90, 896, 1039, 1088
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	826
HpyCH4III	ACNGT	2 cut(s)	459, 590
HpyCH4IV	ACGT	2 cut(s)	228, 1159
HpyCH4V	TGCA	3 cut(s)	179, 269, 691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 185, 539, 1108
HpyF3I	CTNAG	5 cut(s)	447, 669, 802, 1013, 1154
HpySE526I	ACGT	2 cut(s)	228, 1159
Hsp92II	CATG	9 cut(s)	533, 679, 730, 758, 820, 826, 874, 889, 1106
Ksp22I	TGATCA	2 cut(s)	42, 370
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	5 cut(s)	42, 84, 92, 271, 370
LguI	GCTCTTC	1 cut(s)	1079
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	2 cut(s)	56, 172
LweI	GCATC	3 cut(s)	756, 763, 898
MaeII	ACGT	2 cut(s)	228, 1159
MaeIII	GTNAC	2 cut(s)	401, 787
MalI	GATC	5 cut(s)	44, 86, 94, 273, 372
MboI	GATC	5 cut(s)	42, 84, 92, 271, 370
MboII	GAAGA	9 cut(s)	20, 25, 116, 240, 716, 860, 917, 1066, 1067
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	1074, 1113
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	210, 233, 335, 383, 625, 1046
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	717, 883
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	771, 821
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	69, 470
MspR9I	CCNGG	3 cut(s)	480, 697, 744
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	3 cut(s)	480, 697, 744
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	4 cut(s)	141, 185, 539, 1108
NdeII	GATC	5 cut(s)	42, 84, 92, 271, 370
NlaIII	CATG	9 cut(s)	533, 679, 730, 758, 820, 826, 874, 889, 1106
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	874
PciSI	GCTCTTC	1 cut(s)	1079
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	4 cut(s)	612, 759, 806, 860
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	3 cut(s)	71, 187, 469
PleI	GAGTC	2 cut(s)	717, 883
PpsI	GAGTC	2 cut(s)	717, 883
Psp124BI	GAGCTC	1 cut(s)	1074
Psp6I	CCWGG	3 cut(s)	478, 695, 742
PspGI	CCWGG	3 cut(s)	478, 695, 742
PspPI	GGNCC	1 cut(s)	290
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	69
RsaI	GTAC	3 cut(s)	461, 564, 990
RsaNI	GTAC	3 cut(s)	460, 563, 989
RseI	CAYNNNNRTG	2 cut(s)	771, 821
SacI	GAGCTC	1 cut(s)	1074
SacII	CCGCGG	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	1079
SatI	GCNGC	3 cut(s)	70, 186, 468
Sau3AI	GATC	5 cut(s)	42, 84, 92, 271, 370
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	2 cut(s)	717, 883
ScrFI	CCNGG	3 cut(s)	480, 697, 744
SduI	GDGCHC	2 cut(s)	1074, 1113
SfaNI	GCATC	3 cut(s)	756, 763, 898
SfcI	CTRYAG	1 cut(s)	285
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SmiMI	CAYNNNNRTG	2 cut(s)	771, 821
SmlI	CTYRAG	1 cut(s)	894
SmoI	CTYRAG	1 cut(s)	894
Sse9I	AATT	6 cut(s)	210, 233, 335, 383, 625, 1046
SsiI	CCGC	3 cut(s)	468, 470, 992
SspI	AATATT	1 cut(s)	1062
SstI	GAGCTC	1 cut(s)	1074
StyD4I	CCNGG	3 cut(s)	478, 695, 742
StyI	CCWWGG	3 cut(s)	189, 352, 966
TaaI	ACNGT	2 cut(s)	459, 590
TaiI	ACGT	2 cut(s)	231, 1162
TaqI	TCGA	5 cut(s)	83, 225, 312, 629, 1077
TasI	AATT	6 cut(s)	210, 233, 335, 383, 625, 1046
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	4 cut(s)	612, 759, 806, 860
TscAI	CASTG	2 cut(s)	102, 406
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	69, 185
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	7 cut(s)	72, 134, 509, 518, 536, 651, 852
TspRI	CASTG	2 cut(s)	102, 406
Van91I	CCANNNNNTGG	1 cut(s)	549
XapI	RAATTY	4 cut(s)	233, 335, 383, 625
XceI	RCATGY	1 cut(s)	874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.