Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

15368098 .. 15371153

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGCGATTGTTTTGATTCAGCTCGAGTTATTGGCTTTGGTTGCATGCCCGAAAGGGAAGGGAAACAGGTTATGGTTCCGGGCCTACCGCCCAAGAATTGGTTCTGGTTATGATGATCTCTGCATATGCTGCCTCGACATCCGACGACATTGCACCTGCAATTTCACTCACAGAGAATGCATCAATGCACTTCATAAGATGAGATCCAAACATAATGAGGATCTATGCCTGGGAATTGGTGTTAAACGGGGTGGATATTCGGGCATGTCGTATACCATGGACTTCTATAGTAAAGAAAATGCAAGACCAGATGATTCAACCATTGAATATAATGGTTTTAAGATAGTTAGAGTAATGATCGCACTTTATGTTGATCCAAATGATTGGGGGGTGATGCTCGAGCGAGTAGCAGAGAAGATGGAAAAGGACTTGATCATGGTTGGTGCTACAGTTTGTGGAGGACAAATTGCAAAAAAAGATGCCCCAATGCATATACAATCTTGCACAACTGATCTCAAGATCTGGGTGTTGACGAGGGATAAGATGGAAACTGCAATCAACATAGGGTTTGCTGATGCTGCTGCTTCCAAGAATACTTCGACCATGACAAAGTCCTCTTCATCATCTCAACCCAATCGTGGATCACGGATCTCTAAAGAGCTGGTTAAGGCACATCAATACCGAGCTATTTATTTGACTTTTCACTTCATTCATTTGCTTGTGTTGAGGGCATGCACTAGAATGCTTTTCTTGCGTAAAATGTTGGTTTCAATGATTGGGAAATGCACCCTTTTGCTTTTGAAGTTTAAAGTTTTTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

275

Amino Acids

31.13

Weight (kDa)

9.42

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	5 cut(s)	201, 231, 371, 652, 659
AfiI	CCNNNNNNNGG	2 cut(s)	101, 641
AgsI	TTSAA	4 cut(s)	321, 329, 774, 805
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	3 cut(s)	25, 664, 689
AluI	AGCT	3 cut(s)	25, 664, 689
AlwI	GGATC	5 cut(s)	201, 231, 371, 652, 659
Ama87I	CYCGRG	2 cut(s)	26, 401
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	4 cut(s)	5, 132, 581, 584
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	2 cut(s)	26, 401
BbvI	GCAGC	3 cut(s)	119, 568, 571
BccI	CCATC	2 cut(s)	415, 541
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	2 cut(s)	289, 450
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	4 cut(s)	6, 133, 582, 585
BlsI	GCNGC	4 cut(s)	7, 134, 583, 586
Bme1390I	CCNGG	2 cut(s)	83, 233
BmeT110I	CYCGRG	2 cut(s)	26, 401
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	83, 233
BmsI	GCATC	4 cut(s)	192, 387, 472, 568
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	232, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 641
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	232, 279
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	101, 641
BseMI	GCAATG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	119, 568, 571
BshFI	GGCC	1 cut(s)	86
BsiHKCI	CYCGRG	2 cut(s)	26, 401
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	101, 641
BsmI	GAATGC	2 cut(s)	185, 750
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	2 cut(s)	26, 401
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	5 cut(s)	201, 231, 371, 652, 659
BsrDI	GCAATG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	232, 279
BssNAI	GTATAC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	625
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	49, 736
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 132, 581, 754
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	3 cut(s)	51, 271, 738
BstSCI	CCNGG	2 cut(s)	81, 231
BstSFI	CTRYAG	2 cut(s)	289, 450
BstV1I	GCAGC	3 cut(s)	119, 568, 571
BstX2I	RGATCY	4 cut(s)	206, 223, 522, 651
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	4 cut(s)	206, 223, 522, 651
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	49, 736
Cfr13I	GGNCC	1 cut(s)	84
CviAII	CATG	6 cut(s)	48, 268, 280, 439, 607, 735
CviJI	RGCY	6 cut(s)	5, 25, 38, 86, 664, 689
CviKI_1	RGCY	6 cut(s)	5, 25, 38, 86, 664, 689
DraI	TTTAAA	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	279
Eco88I	CYCGRG	2 cut(s)	26, 401
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	279
EcoT22I	ATGCAT	2 cut(s)	185, 495
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	6 cut(s)	51, 271, 283, 442, 610, 738
FatI	CATG	6 cut(s)	47, 267, 279, 438, 606, 734
FauNDI	CATATG	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	4 cut(s)	6, 133, 582, 585
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	6, 133, 582, 585
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	4 cut(s)	6, 133, 582, 585
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	6 cut(s)	51, 271, 283, 442, 610, 738
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	2 cut(s)	19, 317
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	276, 534
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	520
Hpy8I	GTNNAC	2 cut(s)	276, 534
Hpy99I	CGWCG	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 132, 581, 754
Hsp92II	CATG	6 cut(s)	51, 271, 283, 442, 610, 738
Ksp22I	TGATCA	1 cut(s)	435
LpnPI	CCDG	9 cut(s)	55, 93, 95, 172, 218, 245, 324, 511, 650
Lsp1109I	GCAGC	3 cut(s)	119, 568, 571
LweI	GCATC	4 cut(s)	192, 387, 472, 568
MaeI	CTAG	1 cut(s)	741
MboII	GAAGA	2 cut(s)	430, 612
MflI	RGATCY	4 cut(s)	206, 223, 522, 651
MluCI	AATT	4 cut(s)	99, 163, 237, 468
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	146, 214, 455, 531, 628, 723
Mph1103I	ATGCAT	2 cut(s)	185, 495
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	4 cut(s)	246, 342, 669, 810
MslI	CAYNNNNRTG	1 cut(s)	743
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	83, 233
Mva1269I	GAATGC	2 cut(s)	185, 750
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	4 cut(s)	44, 132, 581, 754
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	128
NlaIII	CATG	6 cut(s)	51, 271, 283, 442, 610, 738
NlaIV	GGNNCC	1 cut(s)	80
NsiI	ATGCAT	2 cut(s)	185, 495
NspI	RCATGY	3 cut(s)	51, 271, 738
PaeI	GCATGC	2 cut(s)	51, 738
PaeR7I	CTCGAG	2 cut(s)	26, 401
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	2 cut(s)	185, 750
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	19, 317
PflFI	GACNNNGTC	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	7, 134, 583, 586
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	84
PspXI	VCTCGAGB	2 cut(s)	26, 401
PsuI	RGATCY	4 cut(s)	206, 223, 522, 651
PsyI	GACNNNGTC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	4 cut(s)	246, 342, 669, 810
SatI	GCNGC	4 cut(s)	6, 133, 582, 585
Sau96I	GGNCC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	83, 233
SetI	ASST	5 cut(s)	27, 74, 161, 666, 691
SfaNI	GCATC	4 cut(s)	192, 387, 472, 568
SfcI	CTRYAG	2 cut(s)	289, 450
Sfr274I	CTCGAG	2 cut(s)	26, 401
SlaI	CTCGAG	2 cut(s)	26, 401
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	3 cut(s)	26, 401, 518
SmoI	CTYRAG	3 cut(s)	26, 401, 518
SphI	GCATGC	2 cut(s)	51, 738
Sse9I	AATT	4 cut(s)	99, 163, 237, 468
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	81, 231
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	4 cut(s)	27, 138, 402, 602
TasI	AATT	4 cut(s)	99, 163, 237, 468
TfiI	GAWTC	2 cut(s)	19, 317
Tru1I	TTAA	4 cut(s)	246, 342, 669, 810
Tru9I	TTAA	4 cut(s)	246, 342, 669, 810
TseI	GCWGC	4 cut(s)	5, 132, 581, 584
TspDTI	ATGAA	4 cut(s)	185, 612, 700, 704
TspGWI	ACGGA	1 cut(s)	664
Tth111I	GACNNNGTC	1 cut(s)	613
Van91I	CCANNNNNTGG	1 cut(s)	101
XceI	RCATGY	3 cut(s)	51, 271, 738
XhoI	CTCGAG	2 cut(s)	26, 401
XmiI	GTMKAC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	741
Zsp2I	ATGCAT	2 cut(s)	185, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.