Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

63457825 .. 63461617

Gene Structure 3793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG426900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAGTTCCAGCTTTCTACAGATGGCTAGCAGAGAAGTATCCACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCGGTTGTAATCGACGACGTTTCGATTCCGGTCCACACCAGTAAGCCAAACCCTACCGGGGAGATTGTGCTTGGTAATGGCTGCGATTGTTTTGATTCAGCTCTGAGTTATTGGCTTTGGTTGCATGCCCTGAAAGGGAAGGGAAATGGGTTCTGGTTCCGGGCCTACTACCAAGAATTGGTTCTGGTTATGATGATCTCTGCATATGGTAATTACGCACTGCCTCTCCTCTCTTCTTCGTTTCCTCTTCAGCTCGGAATTCAATTTCTTTCTGATTTTCATCCACTACTATCAGCCATGGAATACCCATTCAATTCAACTTCCACTGCCTCGACATCCGACGACATTGCACCTGCAATTTCACTCACAGAGAATGCATCAAAGCACTTCAATAAGATAAGATCCAAACATAATGAGGATCTATGCCTAGGAATTGGTGTTAAACAGGCAAAATCATCTATCGAGGCTGATAGGGAGGTGATGCTTGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAAAGGCTGTGATGGCCAATGACTTTGCTATTGCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCATATGATTTGCTACTTCTACAAAAATATAGCATTTGGTCTGGTACATGCTACTTTGAGGCATTCACCGGATATCCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

271

Amino Acids

30.48

Weight (kDa)

6.05

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	215 - 261	2.1e-19	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	253
AclWI	GGATC	2 cut(s)	471, 501
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	4 cut(s)	133, 210, 253, 675
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	338, 388, 393, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	4 cut(s)	14, 176, 328, 614
AluI	AGCT	4 cut(s)	14, 176, 328, 614
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	471, 501
AoxI	GGCC	2 cut(s)	237, 648
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	255
AspA2I	CCTAGG	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	106, 237
AsuC2I	CCSGG	2 cut(s)	133, 236
AsuHPI	GGTGA	2 cut(s)	565, 789
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	650
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	3 cut(s)	18, 574, 640
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	2 cut(s)	133, 236
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	2 cut(s)	29, 503
BfmI	CTRYAG	2 cut(s)	19, 609
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	157
BlnI	CCTAGG	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	133, 236
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	106, 237
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	133, 236
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	461, 546
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	2 cut(s)	133, 236
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	5 cut(s)	132, 372, 502, 703, 808
BsaWI	WCCGGW	3 cut(s)	76, 103, 799
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 210, 253, 675
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	114, 670
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	5 cut(s)	132, 372, 502, 703, 808
BseGI	GGATG	2 cut(s)	355, 410
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	4 cut(s)	133, 210, 253, 675
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	2 cut(s)	114, 670
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	239, 650
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	5 cut(s)	77, 104, 132, 235, 800
BslI	CCNNNNNNNGG	4 cut(s)	133, 210, 253, 675
BsmAI	GTCTC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	454, 793
BsnI	GGCC	2 cut(s)	239, 650
Bsp143I	GATC	4 cut(s)	270, 476, 493, 594
Bsp19I	CCATGG	2 cut(s)	372, 703
BspANI	GGCC	2 cut(s)	239, 650
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	471, 501
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	114, 670
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	5 cut(s)	132, 372, 502, 703, 808
BssMI	GATC	4 cut(s)	270, 476, 493, 594
BssT1I	CCWWGG	4 cut(s)	372, 502, 703, 808
Bst6I	CTCTTC	2 cut(s)	313, 327
BstC8I	GCNNGC	2 cut(s)	30, 201
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	2 cut(s)	372, 703
BstF5I	GGATG	2 cut(s)	355, 410
BstKTI	GATC	4 cut(s)	273, 479, 496, 597
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	4 cut(s)	270, 476, 493, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 647
BstNSI	RCATGY	2 cut(s)	203, 782
BstSCI	CCNGG	2 cut(s)	131, 234
BstSFI	CTRYAG	2 cut(s)	19, 609
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	476, 493
BstYI	RGATCY	2 cut(s)	476, 493
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	239, 650
BtgI	CCRYGG	2 cut(s)	372, 703
BtsCI	GGATG	2 cut(s)	355, 410
BtsI	GCAGTG	2 cut(s)	293, 399
BtsIMutI	CAGTG	2 cut(s)	293, 399
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	30, 201
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	106, 237
Csp6I	GTAC	1 cut(s)	776
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	5 cut(s)	200, 373, 598, 704, 779
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	4 cut(s)	272, 478, 495, 596
DpnII	GATC	4 cut(s)	270, 476, 493, 594
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	2 cut(s)	313, 327
EarI	CTCTTC	2 cut(s)	313, 327
Eco130I	CCWWGG	4 cut(s)	372, 502, 703, 808
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	4 cut(s)	372, 502, 703, 808
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	4 cut(s)	372, 502, 703, 808
FaeI	CATG	5 cut(s)	203, 376, 601, 707, 782
FatI	CATG	5 cut(s)	199, 372, 597, 703, 778
FauNDI	CATATG	2 cut(s)	280, 735
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	342, 397
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	29, 503
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	239, 650
HapII	CCGG	5 cut(s)	77, 104, 132, 235, 800
Hin1II	CATG	5 cut(s)	203, 376, 601, 707, 782
HinfI	GANTC	2 cut(s)	100, 170
HpaII	CCGG	5 cut(s)	77, 104, 132, 235, 800
HphI	GGTGA	2 cut(s)	565, 789
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	180, 332, 349, 415
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	6 cut(s)	53, 56, 59, 92, 95, 419
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	199, 278, 425, 431, 452, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 647
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	203, 376, 601, 707, 782
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	270, 476, 493, 594
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	461, 546
MaeI	CTAG	2 cut(s)	29, 503
MaeII	ACGT	1 cut(s)	93
MalI	GATC	4 cut(s)	272, 478, 495, 596
MboI	GATC	4 cut(s)	270, 476, 493, 594
MboII	GAAGA	6 cut(s)	80, 83, 300, 303, 314, 589
MflI	RGATCY	2 cut(s)	476, 493
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	8 cut(s)	251, 286, 333, 338, 388, 432, 507, 626
MluNI	TGGCCA	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	9 cut(s)	309, 314, 330, 415, 484, 532, 544, 613, 783
Mox20I	TGGCCA	1 cut(s)	650
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	5 cut(s)	77, 104, 132, 235, 800
MspR9I	CCNGG	2 cut(s)	133, 236
Mva1269I	GAATGC	2 cut(s)	454, 793
MwoI	GCNNNNNNNGC	2 cut(s)	196, 647
NciI	CCSGG	2 cut(s)	133, 236
NcoI	CCATGG	2 cut(s)	372, 703
NdeI	CATATG	2 cut(s)	280, 735
NdeII	GATC	4 cut(s)	270, 476, 493, 594
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	203, 376, 601, 707, 782
NlaIV	GGNNCC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	203, 782
PaeI	GCATGC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	454, 793
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	100, 170
PflMI	CCANNNNNTGG	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	106, 237
PsuI	RGATCY	2 cut(s)	476, 493
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	4 cut(s)	270, 476, 493, 594
Sau96I	GGNCC	2 cut(s)	106, 237
ScrFI	CCNGG	2 cut(s)	133, 236
SetI	ASST	7 cut(s)	16, 96, 178, 330, 430, 555, 616
SfaNI	GCATC	2 cut(s)	461, 546
SfcI	CTRYAG	2 cut(s)	19, 609
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	8 cut(s)	251, 286, 333, 338, 388, 432, 507, 626
SspMI	CTAG	2 cut(s)	29, 503
StyD4I	CCNGG	2 cut(s)	131, 234
StyI	CCWWGG	4 cut(s)	372, 502, 703, 808
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	5 cut(s)	57, 87, 98, 407, 537
TasI	AATT	8 cut(s)	251, 286, 333, 338, 388, 432, 507, 626
TfiI	GAWTC	2 cut(s)	100, 170
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	2 cut(s)	300, 406
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	300, 406
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	2 cut(s)	203, 782
XmaJI	CCTAGG	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	29, 503
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.