Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

43968915 .. 43970197

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0352400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTAGGGCTAGGAACATAGCGGCTCTTGCTTCTTTTCAAACTGCAACTAAGACAGGTGGTCCAGCTGCTGTTGCAGTTGGGGGAAGACTCATCCAGACTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGCGGCCATGATGCTGGCCAGGTTATCTTTGGATTAATATTTCTACTACTGAAGGACCGGCTCCATATTGAAGTTATTCGAACTTGGGGCACAAGAGTTGTTGGGCTTACTTTACTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCGAGTCCTTGTGTTGCCTTGGAGAATGGCGAGTGTGATGTTAGTGTGTACGAAACTCTTGATAACCCAACTGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACCGGAATTGTGCATGGGCTGCAGCCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCGTGTTGCTGGCGCTGCATTTCTAGTTATGTTCTTAGTTGGGACCGTAGTTGCCATGGGAAGCTACACAGTCTTTCTAGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005488 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006950 GO:0006996 GO:0008150 GO:0008270 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010286 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019216 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034204 GO:0040007 GO:0042623 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045332 GO:0046872 GO:0046914 GO:0048193 GO:0048194 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0080090 GO:0097035 GO:0098791 GO:1905038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

220

Amino Acids

22.8

Weight (kDa)

7.73

Isoelectric Point (pI)

25.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	3 cut(s)	23, 208, 246
AcoI	YGGCCR	2 cut(s)	247, 259
AcuI	CTGAAG	2 cut(s)	314, 375
AfaI	GTAC	2 cut(s)	205, 449
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	41, 215, 314
AhdI	GACNNNNNGTC	1 cut(s)	60
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	4 cut(s)	68, 176, 389, 639
AluI	AGCT	4 cut(s)	68, 176, 389, 639
Alw21I	GWGCWC	1 cut(s)	223
AlwNI	CAGNNNCTG	2 cut(s)	71, 164
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	3 cut(s)	161, 247, 259
ApeKI	GCWGC	5 cut(s)	68, 176, 526, 529, 590
AseI	ATTAAT	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	5 cut(s)	62, 123, 161, 298, 618
AsuII	TTCGAA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	400
AvaII	GGWCC	4 cut(s)	62, 123, 298, 618
BaeGI	GKGCMC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	5 cut(s)	55, 163, 513, 541, 577
BccI	CCATC	2 cut(s)	541, 580
BciT130I	CCWGG	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	5 cut(s)	12, 173, 359, 599, 653
BfmI	CTRYAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	591
BisI	GCNGC	7 cut(s)	24, 69, 177, 247, 527, 530, 591
BlsI	GCNGC	7 cut(s)	25, 70, 178, 248, 528, 531, 592
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	4 cut(s)	62, 123, 298, 618
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	400
BmgT120I	GGNCC	5 cut(s)	62, 123, 161, 298, 618
BmiI	GGNNCC	4 cut(s)	186, 232, 305, 619
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	233, 244, 526
BpiI	GAAGAC	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	417, 630
BsaWI	WCCGGW	2 cut(s)	125, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	2 cut(s)	125, 300
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	417, 630
BseGI	GGATG	2 cut(s)	93, 248
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	5 cut(s)	55, 163, 513, 541, 577
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	3 cut(s)	163, 249, 261
BshTI	ACCGGT	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	3 cut(s)	126, 301, 510
BslFI	GGGAC	2 cut(s)	383, 631
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	383, 631
BsnI	GGCC	3 cut(s)	163, 249, 261
BsoBI	CYCGRG	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	3 cut(s)	223, 235, 335
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	3 cut(s)	23, 208, 246
BspANI	GGCC	3 cut(s)	163, 249, 261
BspHI	TCATGA	1 cut(s)	659
BspLI	GGNNCC	4 cut(s)	186, 232, 305, 619
BspMAI	CTGCAG	1 cut(s)	531
BspT104I	TTCGAA	1 cut(s)	322
BsrFI	RCCGGY	2 cut(s)	125, 300
BssAI	RCCGGY	2 cut(s)	125, 300
BssECI	CCNNGG	2 cut(s)	417, 630
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	417, 630
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	3 cut(s)	472, 622, 646
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	146, 259, 558, 586
BstDEI	CTNAG	3 cut(s)	51, 110, 610
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	2 cut(s)	93, 248
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 74, 182, 503, 526, 590
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	527
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	5 cut(s)	55, 163, 513, 541, 577
BstV2I	GAAGAC	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	163, 249, 261
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	93, 248
Cac8I	GCNNGC	4 cut(s)	146, 259, 558, 586
CaiI	CAGNNNCTG	2 cut(s)	71, 164
CciI	TCATGA	1 cut(s)	659
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	2 cut(s)	125, 300
Cfr13I	GGNCC	5 cut(s)	62, 123, 161, 298, 618
Csp6I	GTAC	2 cut(s)	204, 448
CspAI	ACCGGT	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	5 cut(s)	120, 251, 521, 631, 660
CviQI	GTAC	2 cut(s)	204, 448
DdeI	CTNAG	3 cut(s)	51, 110, 610
DriI	GACNNNNNGTC	1 cut(s)	60
EaeI	YGGCCR	2 cut(s)	247, 259
Eam1105I	GACNNNNNGTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	417, 630
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	4 cut(s)	62, 123, 298, 618
Eco57I	CTGAAG	2 cut(s)	314, 375
Eco88I	CYCGRG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	417, 630
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	417, 630
FaeI	CATG	5 cut(s)	123, 254, 524, 634, 663
FaiI	YATR	9 cut(s)	20, 121, 252, 309, 374, 522, 605, 632, 661
FaqI	GGGAC	2 cut(s)	383, 631
FatI	CATG	5 cut(s)	119, 250, 520, 630, 659
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	7 cut(s)	24, 69, 177, 247, 527, 530, 591
FokI	GGATG	2 cut(s)	80, 255
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	7 cut(s)	24, 69, 177, 247, 527, 530, 591
FspBI	CTAG	5 cut(s)	12, 173, 359, 599, 653
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	7 cut(s)	24, 69, 177, 247, 527, 530, 591
HaeII	RGCGCY	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	163, 249, 261
HapII	CCGG	3 cut(s)	126, 301, 510
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	5 cut(s)	123, 254, 524, 634, 663
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	2 cut(s)	90, 403
HpaII	CCGG	3 cut(s)	126, 301, 510
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	4 cut(s)	97, 400, 458, 660
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	3 cut(s)	472, 622, 646
HpyCH4V	TGCA	9 cut(s)	47, 77, 119, 148, 520, 529, 539, 560, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 74, 182, 503, 526, 590
HpyF3I	CTNAG	3 cut(s)	51, 110, 610
Hsp92II	CATG	5 cut(s)	123, 254, 524, 634, 663
HspAI	GCGC	1 cut(s)	588
LmnI	GCTCC	3 cut(s)	190, 230, 309
Lsp1109I	GCAGC	5 cut(s)	55, 163, 513, 541, 577
LweI	GCATC	3 cut(s)	233, 244, 526
MaeI	CTAG	5 cut(s)	12, 173, 359, 599, 653
MboII	GAAGA	4 cut(s)	99, 490, 493, 496
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	3 cut(s)	223, 235, 335
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	3 cut(s)	104, 195, 513
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	84, 412
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	1 cut(s)	245
Mox20I	TGGCCA	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	2 cut(s)	278, 381
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	3 cut(s)	126, 301, 510
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	6 cut(s)	29, 74, 182, 503, 526, 590
NcoI	CCATGG	1 cut(s)	630
NlaIII	CATG	5 cut(s)	123, 254, 524, 634, 663
NlaIV	GGNNCC	4 cut(s)	186, 232, 305, 619
NsiI	ATGCAT	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	322
PagI	TCATGA	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	7 cut(s)	25, 70, 178, 248, 528, 531, 592
PleI	GAGTC	2 cut(s)	84, 411
PpsI	GAGTC	2 cut(s)	84, 411
PshBI	ATTAAT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	186, 232, 305, 619
PspPI	GGNCC	5 cut(s)	62, 123, 161, 298, 618
PstI	CTGCAG	1 cut(s)	531
PstNI	CAGNNNCTG	2 cut(s)	71, 164
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	205, 449
RsaNI	GTAC	2 cut(s)	204, 448
SaqAI	TTAA	2 cut(s)	278, 381
SatI	GCNGC	7 cut(s)	24, 69, 177, 247, 527, 530, 591
Sau96I	GGNCC	5 cut(s)	62, 123, 161, 298, 618
SchI	GAGTC	2 cut(s)	84, 412
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	3 cut(s)	223, 235, 335
SetI	ASST	7 cut(s)	61, 70, 174, 178, 267, 391, 641
SfaNI	GCATC	3 cut(s)	233, 244, 526
SfcI	CTRYAG	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	4 cut(s)	62, 123, 298, 618
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	3 cut(s)	104, 195, 513
SsiI	CCGC	3 cut(s)	23, 208, 246
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	5 cut(s)	12, 173, 359, 599, 653
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	417, 630
TaaI	ACNGT	3 cut(s)	472, 622, 646
TaqI	TCGA	1 cut(s)	322
TasI	AATT	3 cut(s)	104, 195, 513
TauI	GCSGC	2 cut(s)	26, 249
Tru1I	TTAA	2 cut(s)	278, 381
Tru9I	TTAA	2 cut(s)	278, 381
TseI	GCWGC	5 cut(s)	68, 176, 526, 529, 590
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	4 cut(s)	62, 123, 298, 618
VspI	ATTAAT	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	5 cut(s)	12, 173, 359, 599, 653
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.