Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

40022655 .. 40026553

Gene Structure 3899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAGTTCCGGCTTTCTACGGATGGCTAGCGGAGAAGTATCCACTCGTCGTCGTCGATGTAGTGGAAGAAGAACCGGTTGTAATCGACGATGTTTCGATTCCGGTCCACACCCTCGAGTTATTGGCTTTGGTTGCATGCCCCGAAAGGGAAGGGAAACAGGTTATGGTTCCGGGCCTACTGCCAAGAATTGGTTCTGCTGCCTTGACATCCGACGACATTGCACCTGCTATTTCACTCACAGAGAATGCATCAAAGCACTTCAATATGATGAGATCCAAACATAATGAGGATCTATGCCTAGGAATTGGTGTTAAACGGGGTGGATATTCGGGCATGTCGTATACCATGGACTTCTATAGTAAAGAAAATGCAAGACCAGATGATTCAACCATTGAATATAATGGTTTTAAGATAGCAAAATCATCTATCGGGGCTGATAGGGAGGTGATGCTCGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACGGCTATGGAGGACAAATTGCAAAAAAGGATTTGCAACTTCTACAAAAATATAGCATTTGGTCTGGTACATGCTACTTTGAGGCATTCACCGGATATTCGGGGTGATGCTGCTGCTTCCAAGAATACTTCGACCATGACAAAGTCCTCTTCATCATCTCAACCCAATCGTGGATCACGATCTCTAAAGAGCTGGTCAAGGCACATCAATACCGATCTATTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

243

Amino Acids

26.77

Weight (kDa)

6.32

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	3 cut(s)	270, 300, 685
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	3 cut(s)	148, 191, 674
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	265, 390, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	1 cut(s)	696
AluI	AGCT	1 cut(s)	696
AlwI	GGATC	3 cut(s)	270, 300, 685
Ama87I	CYCGRG	2 cut(s)	116, 455
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	200, 614, 617
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	193
AspA2I	CCTAGG	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	106, 175
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	460, 585, 620
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	2 cut(s)	116, 455
AvaII	GGWCC	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	187, 601, 604
BccI	CCATC	2 cut(s)	18, 469
BceAI	ACGGC	1 cut(s)	522
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	174
BfaI	CTAG	2 cut(s)	29, 302
BfmI	CTRYAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	201, 615, 618
BlnI	CCTAGG	1 cut(s)	301
BlsI	GCNGC	3 cut(s)	202, 616, 619
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	2 cut(s)	116, 455
BmgT120I	GGNCC	2 cut(s)	106, 175
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	260, 441, 601
BmtI	GCTAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	682
BsaJI	CCNNGG	2 cut(s)	301, 348
BsaWI	WCCGGW	3 cut(s)	76, 103, 595
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 191, 674
Bse118I	RCCGGY	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	301, 348
BseGI	GGATG	2 cut(s)	29, 209
BseJI	GATNNNNATC	1 cut(s)	682
BseLI	CCNNNNNNNGG	3 cut(s)	148, 191, 674
BseMI	GCAATG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	187, 601, 604
BshFI	GGCC	1 cut(s)	177
BshTI	ACCGGT	1 cut(s)	76
BsiHKCI	CYCGRG	2 cut(s)	116, 455
BsiSI	CCGG	5 cut(s)	11, 77, 104, 173, 596
BslI	CCNNNNNNNGG	3 cut(s)	148, 191, 674
BsmI	GAATGC	2 cut(s)	253, 589
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	2 cut(s)	116, 455
Bsp143I	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	270, 300, 685
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	301, 348
BssMI	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
BssNAI	GTATAC	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	301, 348
Bst1107I	GTATAC	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	30, 139
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	29, 209
BstKTI	GATC	6 cut(s)	278, 295, 492, 680, 686, 721
BstMBI	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	3 cut(s)	141, 340, 578
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	187, 601, 604
BstX2I	RGATCY	2 cut(s)	275, 292
BstYI	RGATCY	2 cut(s)	275, 292
BstZ17I	GTATAC	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	29, 209
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	30, 139
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	106, 175
Csp6I	GTAC	1 cut(s)	572
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	6 cut(s)	138, 337, 349, 493, 575, 640
CviJI	RGCY	7 cut(s)	14, 28, 128, 177, 437, 509, 696
CviKI_1	RGCY	7 cut(s)	14, 28, 128, 177, 437, 509, 696
CviQI	GTAC	1 cut(s)	572
DpnI	GATC	6 cut(s)	277, 294, 491, 679, 685, 720
DpnII	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
Eco130I	CCWWGG	2 cut(s)	301, 348
Eco47I	GGWCC	1 cut(s)	106
Eco88I	CYCGRG	2 cut(s)	116, 455
EcoT14I	CCWWGG	2 cut(s)	301, 348
EcoT22I	ATGCAT	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	301, 348
FaeI	CATG	6 cut(s)	141, 340, 352, 496, 578, 643
FatI	CATG	6 cut(s)	137, 336, 348, 492, 574, 639
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	3 cut(s)	201, 615, 618
FokI	GGATG	2 cut(s)	36, 196
Fsp4HI	GCNGC	3 cut(s)	201, 615, 618
FspBI	CTAG	2 cut(s)	29, 302
GluI	GCNGC	3 cut(s)	201, 615, 618
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	5 cut(s)	11, 77, 104, 173, 596
Hin1II	CATG	6 cut(s)	141, 340, 352, 496, 578, 643
HinfI	GANTC	2 cut(s)	100, 386
HpaII	CCGG	5 cut(s)	11, 77, 104, 173, 596
HphI	GGTGA	3 cut(s)	460, 585, 620
Hpy166II	GTNNAC	2 cut(s)	109, 345
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	681
Hpy8I	GTNNAC	2 cut(s)	109, 345
Hpy99I	CGWCG	5 cut(s)	53, 56, 59, 92, 218
HpyAV	CCTTC	1 cut(s)	146
HpyCH4V	TGCA	6 cut(s)	137, 224, 251, 374, 526, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	6 cut(s)	141, 340, 352, 496, 578, 643
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
Lsp1109I	GCAGC	3 cut(s)	187, 601, 604
LweI	GCATC	3 cut(s)	260, 441, 601
MaeI	CTAG	2 cut(s)	29, 302
MalI	GATC	6 cut(s)	277, 294, 491, 679, 685, 720
MboI	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
MboII	GAAGA	4 cut(s)	80, 83, 484, 645
MflI	RGATCY	2 cut(s)	275, 292
MluCI	AATT	3 cut(s)	189, 306, 521
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	125, 283, 439, 508, 579, 661
Mph1103I	ATGCAT	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	315, 411
MspI	CCGG	5 cut(s)	11, 77, 104, 173, 596
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	2 cut(s)	253, 589
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	6 cut(s)	141, 340, 352, 496, 578, 643
NlaIV	GGNNCC	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	3 cut(s)	141, 340, 578
PaeI	GCATGC	1 cut(s)	141
PaeR7I	CTCGAG	2 cut(s)	116, 455
PaqCI	CACCTGC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 338, 679
PctI	GAATGC	2 cut(s)	253, 589
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	100, 386
PflFI	GACNNNGTC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	202, 616, 619
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	106, 175
PspXI	VCTCGAGB	2 cut(s)	116, 455
PsuI	RGATCY	2 cut(s)	275, 292
PsyI	GACNNNGTC	1 cut(s)	646
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	315, 411
SatI	GCNGC	3 cut(s)	201, 615, 618
Sau3AI	GATC	6 cut(s)	275, 292, 489, 677, 683, 718
Sau96I	GGNCC	2 cut(s)	106, 175
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	4 cut(s)	165, 229, 450, 698
SfaNI	GCATC	3 cut(s)	260, 441, 601
SfcI	CTRYAG	1 cut(s)	358
Sfr274I	CTCGAG	2 cut(s)	116, 455
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	2 cut(s)	116, 455
SmlI	CTYRAG	2 cut(s)	116, 455
SmoI	CTYRAG	2 cut(s)	116, 455
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	3 cut(s)	189, 306, 521
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	29, 302
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	301, 348
TaqI	TCGA	6 cut(s)	57, 87, 98, 117, 456, 635
TasI	AATT	3 cut(s)	189, 306, 521
TfiI	GAWTC	2 cut(s)	100, 386
Tru1I	TTAA	2 cut(s)	315, 411
Tru9I	TTAA	2 cut(s)	315, 411
TseI	GCWGC	3 cut(s)	200, 614, 617
TspDTI	ATGAA	1 cut(s)	645
TspGWI	ACGGA	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	646
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	3 cut(s)	141, 340, 578
XhoI	CTCGAG	2 cut(s)	116, 455
XmaJI	CCTAGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	2 cut(s)	29, 302
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.