Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD15G1369000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211 |
| rosa_laevigata | RLG00000001875 RLG00000032521 |
| rosa_multiflora | Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750 |
| rosa_rugosa | Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900 |
| rosa_samantha | Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 253 |
| AclWI | GGATC | 1 cut(s) | 139 |
| AcsI | RAATTY | 1 cut(s) | 28 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 128 |
| AluBI | AGCT | 1 cut(s) | 151 |
| AluI | AGCT | 1 cut(s) | 151 |
| AlwI | GGATC | 1 cut(s) | 139 |
| ApeKI | GCWGC | 2 cut(s) | 68, 71 |
| ApoI | RAATTY | 1 cut(s) | 28 |
| AsuHPI | GGTGA | 1 cut(s) | 102 |
| BbvCI | CCTCAGC | 1 cut(s) | 63 |
| BbvI | GCAGC | 2 cut(s) | 55, 58 |
| BccI | CCATC | 3 cut(s) | 44, 121, 209 |
| BfaI | CTAG | 1 cut(s) | 239 |
| BglII | AGATCT | 1 cut(s) | 9 |
| BisI | GCNGC | 2 cut(s) | 69, 72 |
| BlsI | GCNGC | 2 cut(s) | 70, 73 |
| BmrI | ACTGGG | 1 cut(s) | 50 |
| BmuI | ACTGGG | 1 cut(s) | 50 |
| BpmI | CTGGAG | 1 cut(s) | 228 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 128 |
| Bse1I | ACTGG | 2 cut(s) | 45, 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BseMII | CTCAG | 2 cut(s) | 54, 131 |
| BseNI | ACTGG | 2 cut(s) | 45, 211 |
| BseXI | GCAGC | 2 cut(s) | 55, 58 |
| BslFI | GGGAC | 1 cut(s) | 57 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BsmFI | GGGAC | 1 cut(s) | 57 |
| Bsp143I | GATC | 2 cut(s) | 9, 131 |
| BspCNI | CTCAG | 2 cut(s) | 55, 130 |
| BspPI | GGATC | 1 cut(s) | 139 |
| BsrI | ACTGG | 2 cut(s) | 45, 211 |
| BssMI | GATC | 2 cut(s) | 9, 131 |
| Bst6I | CTCTTC | 1 cut(s) | 112 |
| BstDEI | CTNAG | 2 cut(s) | 63, 117 |
| BstKTI | GATC | 2 cut(s) | 12, 134 |
| BstMBI | GATC | 2 cut(s) | 9, 131 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstV1I | GCAGC | 2 cut(s) | 55, 58 |
| BstX2I | RGATCY | 1 cut(s) | 9 |
| BstYI | RGATCY | 1 cut(s) | 9 |
| BtsIMutI | CAGTG | 1 cut(s) | 38 |
| CviAII | CATG | 1 cut(s) | 94 |
| CviJI | RGCY | 6 cut(s) | 62, 68, 121, 151, 178, 231 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 68, 121, 151, 178, 231 |
| DdeI | CTNAG | 2 cut(s) | 63, 117 |
| DpnI | GATC | 2 cut(s) | 11, 133 |
| DpnII | GATC | 2 cut(s) | 9, 131 |
| Eam1104I | CTCTTC | 1 cut(s) | 112 |
| EarI | CTCTTC | 1 cut(s) | 112 |
| FaeI | CATG | 1 cut(s) | 97 |
| FaiI | YATR | 6 cut(s) | 17, 95, 138, 190, 197, 253 |
| FaqI | GGGAC | 1 cut(s) | 57 |
| FatI | CATG | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 2 cut(s) | 69, 72 |
| Fsp4HI | GCNGC | 2 cut(s) | 69, 72 |
| FspBI | CTAG | 1 cut(s) | 239 |
| GluI | GCNGC | 2 cut(s) | 69, 72 |
| GsuI | CTGGAG | 1 cut(s) | 228 |
| Hin1II | CATG | 1 cut(s) | 97 |
| HphI | GGTGA | 1 cut(s) | 102 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 117 |
| Hsp92II | CATG | 1 cut(s) | 97 |
| Kzo9I | GATC | 2 cut(s) | 9, 131 |
| LpnPI | CCDG | 3 cut(s) | 26, 159, 192 |
| Lsp1109I | GCAGC | 2 cut(s) | 55, 58 |
| MaeI | CTAG | 1 cut(s) | 239 |
| MalI | GATC | 2 cut(s) | 11, 133 |
| MboI | GATC | 2 cut(s) | 9, 131 |
| MboII | GAAGA | 1 cut(s) | 99 |
| MfeI | CAATTG | 1 cut(s) | 225 |
| MflI | RGATCY | 1 cut(s) | 9 |
| MluCI | AATT | 3 cut(s) | 28, 184, 225 |
| MnlI | CCTC | 4 cut(s) | 52, 58, 115, 168 |
| MunI | CAATTG | 1 cut(s) | 225 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NdeII | GATC | 2 cut(s) | 9, 131 |
| NlaIII | CATG | 1 cut(s) | 97 |
| PkrI | GCNGC | 2 cut(s) | 70, 73 |
| PsiI | TTATAA | 1 cut(s) | 253 |
| PsuI | RGATCY | 1 cut(s) | 9 |
| SatI | GCNGC | 2 cut(s) | 69, 72 |
| Sau3AI | GATC | 2 cut(s) | 9, 131 |
| SetI | ASST | 1 cut(s) | 153 |
| SgeI | CNNG | 8 cut(s) | 53, 59, 91, 106, 140, 186, 219, 251 |
| Sse9I | AATT | 3 cut(s) | 28, 184, 225 |
| SspMI | CTAG | 1 cut(s) | 239 |
| TaqI | TCGA | 1 cut(s) | 89 |
| TasI | AATT | 3 cut(s) | 28, 184, 225 |
| TscAI | CASTG | 1 cut(s) | 45 |
| TseI | GCWGC | 2 cut(s) | 68, 71 |
| TspDTI | ATGAA | 2 cut(s) | 17, 157 |
| TspRI | CASTG | 1 cut(s) | 45 |
| XapI | RAATTY | 1 cut(s) | 28 |
| XspI | CTAG | 1 cut(s) | 239 |