Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

53036217 .. 53037545

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGATGTGGTGTCGAGGTGTTCTGCATAGTCAATTTAGGATTACTCATTTGAAGGCGGATAATCCCCTTTATGGTTCTTCCTTGATCAAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGCTTTTGGGACATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGTTCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCAAATGATTGAAGATCACGAGCCTTTTGAGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGATGAGACAAAGGTGTTCGAAGAGGTAGCTGTAACGTTTCAGGAGGTTTCTTTAGAGGTTGTTCATTCTGGTTGGTTTGTGTTTCAGACATTATCTTTTGCTTCTCCAGTTCTCCTAGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

224

Amino Acids

26.32

Weight (kDa)

4.69

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	59 - 130	3.9e-28	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	166, 480
AciI	CCGC	4 cut(s)	56, 164, 276, 289
AclI	AACGTT	2 cut(s)	125, 584
AclWI	GGATC	2 cut(s)	185, 474
AfiI	CCNNNNNNNGG	3 cut(s)	71, 170, 515
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	5 cut(s)	52, 265, 355, 497, 546
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	185, 474
ApeKI	GCWGC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	343, 370
AsuII	TTCGAA	1 cut(s)	567
BauI	CACGAG	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	2 cut(s)	665, 673
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	127, 522
BmuI	ACTGGG	1 cut(s)	391
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	639
Bpu14I	TTCGAA	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 170, 515
Bse1I	ACTGG	2 cut(s)	397, 656
Bse3DI	GCAATG	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	297, 537
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	71, 170, 515
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	397, 656
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	2 cut(s)	166, 480
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	71, 170, 515
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	84, 190, 466, 499
BspACI	CCGC	4 cut(s)	56, 164, 276, 289
BspFNI	CGCG	2 cut(s)	166, 480
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	2 cut(s)	185, 474
BspT104I	TTCGAA	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	397, 656
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	84, 190, 466, 499
BssSI	CACGAG	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	247, 432
Bst6I	CTCTTC	1 cut(s)	564
BstBI	TTCGAA	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	297, 537
BstFNI	CGCG	2 cut(s)	166, 480
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	4 cut(s)	87, 193, 469, 502
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	84, 190, 466, 499
BstNSI	RCATGY	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	284
BstUI	CGCG	2 cut(s)	166, 480
BstV1I	GCAGC	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	297, 537
CfoI	GCGC	1 cut(s)	480
CviAII	CATG	2 cut(s)	184, 424
CviJI	RGCY	7 cut(s)	174, 302, 366, 373, 508, 523, 578
CviKI_1	RGCY	7 cut(s)	174, 302, 366, 373, 508, 523, 578
DpnI	GATC	4 cut(s)	86, 192, 468, 501
DpnII	GATC	4 cut(s)	84, 190, 466, 499
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	71
FaeI	CATG	2 cut(s)	187, 427
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	183, 423
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	2 cut(s)	304, 544
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	2 cut(s)	665, 673
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	639
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	187, 427
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HphI	GGTGA	2 cut(s)	343, 370
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	3 cut(s)	194, 503, 590
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	2 cut(s)	46, 355
HpyCH4III	ACNGT	2 cut(s)	247, 432
HpyCH4IV	ACGT	2 cut(s)	125, 584
HpyCH4V	TGCA	3 cut(s)	25, 122, 286
HpySE526I	ACGT	2 cut(s)	125, 584
Hsp92II	CATG	2 cut(s)	187, 427
HspAI	GCGC	1 cut(s)	478
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 190, 466, 499
LmnI	GCTCC	2 cut(s)	103, 475
LpnPI	CCDG	5 cut(s)	207, 410, 575, 603, 669
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	127, 522
MaeI	CTAG	2 cut(s)	665, 673
MaeII	ACGT	2 cut(s)	125, 584
MaeIII	GTNAC	3 cut(s)	200, 256, 580
MalI	GATC	4 cut(s)	86, 192, 468, 501
MboI	GATC	4 cut(s)	84, 190, 466, 499
MboII	GAAGA	4 cut(s)	69, 334, 509, 581
MluCI	AATT	2 cut(s)	32, 405
MmeI	TCCRAC	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	289
MvnI	CGCG	2 cut(s)	166, 480
NdeII	GATC	4 cut(s)	84, 190, 466, 499
NlaIII	CATG	2 cut(s)	187, 427
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	288
PscI	ACATGT	1 cut(s)	183
Psp1406I	AACGTT	2 cut(s)	125, 584
PspN4I	GGNNCC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	288
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	4 cut(s)	84, 190, 466, 499
SfaNI	GCATC	2 cut(s)	127, 522
SfcI	CTRYAG	1 cut(s)	284
SfuI	TTCGAA	1 cut(s)	567
Sse9I	AATT	2 cut(s)	32, 405
SsiI	CCGC	4 cut(s)	56, 164, 276, 289
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	665, 673
TaaI	ACNGT	2 cut(s)	247, 432
TaiI	ACGT	2 cut(s)	128, 587
TaqI	TCGA	2 cut(s)	13, 567
TasI	AATT	2 cut(s)	32, 405
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	6 cut(s)	148, 240, 252, 391, 426, 602
TspGWI	ACGGA	1 cut(s)	368
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	2 cut(s)	665, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.