Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

53239182 .. 53240678

Gene Structure 1497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTCTTGCATTTTCAGTCAACATGCTTCTGGGACATGTATGATCCAGAGGGTTACTCTCTTTGGTTTTGCGATTACAAATACAATGATGAAAATACAGTCTCATTCGTGACATTAAACAAGGTGGGCGGCTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGATCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGATATGGAACTGTATGATTGGCATAAGGTTGATATCACTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCAGGAGCCTTTTGAGGGGGAGGCCTTGTTGGATGCCAAATGCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

134

Amino Acids

15.97

Weight (kDa)

4.49

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	8 - 81	9.9e-30	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AciI	CCGC	2 cut(s)	129, 142
AclWI	GGATC	4 cut(s)	38, 191, 199, 327
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	208, 350, 400
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	4 cut(s)	38, 191, 199, 327
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	196, 223
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	130, 140
BlsI	GCNGC	2 cut(s)	131, 141
BmiI	GGNNCC	2 cut(s)	246, 360
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	150, 391
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	43, 191, 196, 319, 352
BspACI	CCGC	2 cut(s)	129, 142
BspANI	GGCC	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	246, 360
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	4 cut(s)	38, 191, 199, 327
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	5 cut(s)	43, 191, 196, 319, 352
Bst4CI	ACNGT	2 cut(s)	100, 285
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	150, 391
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	5 cut(s)	46, 194, 199, 322, 355
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	5 cut(s)	43, 191, 196, 319, 352
BstNSI	RCATGY	2 cut(s)	27, 40
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	150, 391
BtsIMutI	CAGTG	1 cut(s)	309
CfoI	GCGC	1 cut(s)	333
CviAII	CATG	2 cut(s)	24, 37
CviJI	RGCY	6 cut(s)	132, 155, 219, 226, 361, 377
CviKI_1	RGCY	6 cut(s)	132, 155, 219, 226, 361, 377
DpnI	GATC	5 cut(s)	45, 193, 198, 321, 354
DpnII	GATC	5 cut(s)	43, 191, 196, 319, 352
Eco147I	AGGCCT	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	307
FaeI	CATG	2 cut(s)	27, 40
FaiI	YATR	9 cut(s)	25, 38, 42, 165, 257, 273, 278, 288, 297
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	23, 36
Fnu4HI	GCNGC	2 cut(s)	130, 140
FokI	GGATG	2 cut(s)	157, 398
Fsp4HI	GCNGC	2 cut(s)	130, 140
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	130, 140
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	27, 40
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HphI	GGTGA	2 cut(s)	196, 223
Hpy166II	GTNNAC	2 cut(s)	21, 337
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	47, 109, 356
Hpy8I	GTNNAC	2 cut(s)	21, 337
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	100, 285
HpyCH4V	TGCA	2 cut(s)	10, 139
Hsp92II	CATG	2 cut(s)	27, 40
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	43, 191, 196, 319, 352
LmnI	GCTCC	2 cut(s)	328, 358
LpnPI	CCDG	5 cut(s)	16, 60, 263, 341, 353
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	53, 109
MalI	GATC	5 cut(s)	45, 193, 198, 321, 354
MboI	GATC	5 cut(s)	43, 191, 196, 319, 352
MboII	GAAGA	2 cut(s)	187, 362
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	43, 210, 235, 310, 361, 367
MseI	TTAA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	333
NdeII	GATC	5 cut(s)	43, 191, 196, 319, 352
NlaIII	CATG	2 cut(s)	27, 40
NlaIV	GGNNCC	2 cut(s)	246, 360
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	27, 40
PceI	AGGCCT	1 cut(s)	377
PciI	ACATGT	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	131, 141
PscI	ACATGT	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	246, 360
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	130, 140
Sau3AI	GATC	5 cut(s)	43, 191, 196, 319, 352
SetI	ASST	4 cut(s)	126, 213, 246, 303
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	258
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	2 cut(s)	129, 142
StuI	AGGCCT	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	100, 285
TasI	AATT	1 cut(s)	258
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	105, 244, 279
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	316
XceI	RCATGY	2 cut(s)	27, 40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.