Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00060

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

34968 .. 37699

Gene Structure 2732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTTTGTCGAACAAGACTCCCCAGTTTCTCAAAATGAATCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCGGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCATTTGAAGGCGGACAATCCCCTTTACGGTTCTTCCTTGATTGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACATTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTTAATTTATCATGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCTCTTTGGTTTTGCGATTACAAATACAATGATGTGGGCGGCTTTCTGCAGCGGATGGATTTGGCTCGTAGATATGCGTTTGGGAAGATGTTGGTGATTGGATCTGATCCTCCTTTCAAGGGGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGATATGGAACTGTATGATTGGCATAAGGTTGATATCACTGATGAGGATCAAAAGGAGCACGTGAACCAGATGATTGAAGTTCAGGAGCCTTTTGAGGGGGAGGCCTTGTTGGATGCCAAATGCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

216

Amino Acids

25.01

Weight (kDa)

4.58

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 39	8.7e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	5 - 41	8e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	6 - 46	7.3e-06	Glutathione S-transferase, N-terminal domain
EF1G	PF00647	101 - 163	1.2e-16	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	2 cut(s)	109, 241
AciI	CCGC	4 cut(s)	131, 239, 375, 388
AclWI	GGATC	4 cut(s)	317, 437, 445, 573
AcvI	CACGTG	1 cut(s)	580
AfiI	CCNNNNNNNGG	5 cut(s)	146, 245, 268, 455, 614
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	127, 164, 454, 596, 646
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	1 cut(s)	579
AlwI	GGATC	4 cut(s)	317, 437, 445, 573
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	2 cut(s)	281, 385
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	268, 397
BccI	CCATC	1 cut(s)	385
BfmI	CTRYAG	1 cut(s)	383
BisI	GCNGC	3 cut(s)	282, 376, 386
BlsI	GCNGC	3 cut(s)	283, 377, 387
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	57, 492, 606
BmrI	ACTGGG	2 cut(s)	19, 490
BmsI	GCATC	2 cut(s)	202, 622
BmuI	ACTGGG	2 cut(s)	19, 490
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu10I	CCTNAGC	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 245, 268, 455, 614
Bse1I	ACTGG	2 cut(s)	25, 496
Bse3DI	GCAATG	3 cut(s)	102, 103, 188
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	2 cut(s)	396, 637
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	5 cut(s)	146, 245, 268, 455, 614
BseMI	GCAATG	3 cut(s)	102, 103, 188
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	25, 496
BseXI	GCAGC	2 cut(s)	268, 397
Bsh1236I	CGCG	2 cut(s)	109, 241
BshFI	GGCC	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	2 cut(s)	74, 269
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	5 cut(s)	146, 245, 268, 455, 614
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	322, 437, 442, 565
BspACI	CCGC	4 cut(s)	131, 239, 375, 388
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	109, 241
BspLI	GGNNCC	3 cut(s)	57, 492, 606
BspMAI	CTGCAG	1 cut(s)	387
BspPI	GGATC	4 cut(s)	317, 437, 445, 573
BsrDI	GCAATG	3 cut(s)	102, 103, 188
BsrI	ACTGG	2 cut(s)	25, 496
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	322, 437, 442, 565
Bst4CI	ACNGT	3 cut(s)	80, 149, 531
BstBAI	YACGTR	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	2 cut(s)	396, 637
BstFNI	CGCG	2 cut(s)	109, 241
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	325, 440, 445, 568
BstMBI	GATC	4 cut(s)	322, 437, 442, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	383
BstUI	CGCG	2 cut(s)	109, 241
BstV1I	GCAGC	2 cut(s)	268, 397
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	396, 637
BtsIMutI	CAGTG	1 cut(s)	555
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	80
CviAII	CATG	2 cut(s)	302, 316
CviJI	RGCY	9 cut(s)	272, 281, 306, 378, 401, 465, 472, 607, 623
CviKI_1	RGCY	9 cut(s)	272, 281, 306, 378, 401, 465, 472, 607, 623
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	4 cut(s)	324, 439, 444, 567
DpnII	GATC	4 cut(s)	322, 437, 442, 565
EciI	GGCGGA	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	623
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	80
Eco72I	CACGTG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	553
FaeI	CATG	2 cut(s)	305, 319
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	301, 315
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	282, 376, 386
FokI	GGATG	2 cut(s)	403, 644
Fsp4HI	GCNGC	3 cut(s)	282, 376, 386
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	282, 376, 386
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	2 cut(s)	74, 269
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	305, 319
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	19, 40
HpaII	CCGG	2 cut(s)	74, 269
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	259, 583
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	2 cut(s)	326, 602
Hpy8I	GTNNAC	2 cut(s)	259, 583
HpyAV	CCTTC	4 cut(s)	46, 121, 272, 454
HpyCH4III	ACNGT	3 cut(s)	80, 149, 531
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	4 cut(s)	197, 254, 284, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	305, 319
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	322, 437, 442, 565
LmnI	GCTCC	3 cut(s)	178, 574, 604
Lsp1109I	GCAGC	2 cut(s)	268, 397
LweI	GCATC	2 cut(s)	202, 622
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	2 cut(s)	115, 332
MalI	GATC	4 cut(s)	324, 439, 444, 567
MboI	GATC	4 cut(s)	322, 437, 442, 565
MboII	GAAGA	2 cut(s)	144, 433
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	3 cut(s)	285, 294, 504
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	45, 609
MnlI	CCTC	8 cut(s)	268, 276, 322, 456, 481, 556, 607, 613
MseI	TTAA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	74, 269
MvnI	CGCG	2 cut(s)	109, 241
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	4 cut(s)	322, 437, 442, 565
NlaIII	CATG	2 cut(s)	305, 319
NlaIV	GGNNCC	3 cut(s)	57, 492, 606
NspI	RCATGY	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	623
PciI	ACATGT	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	283, 377, 387
PleI	GAGTC	1 cut(s)	13
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	580
PscI	ACATGT	1 cut(s)	315
PspCI	CACGTG	1 cut(s)	580
PspN4I	GGNNCC	3 cut(s)	57, 492, 606
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	3 cut(s)	282, 376, 386
Sau3AI	GATC	4 cut(s)	322, 437, 442, 565
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	579
SetI	ASST	6 cut(s)	57, 264, 283, 492, 549, 582
SfaNI	GCATC	2 cut(s)	202, 622
SfcI	CTRYAG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	3 cut(s)	285, 294, 504
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	4 cut(s)	131, 239, 375, 388
SspI	AATATT	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	623
TaaI	ACNGT	3 cut(s)	80, 149, 531
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	285, 294, 504
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	562
TseI	GCWGC	2 cut(s)	281, 385
TspDTI	ATGAA	4 cut(s)	53, 223, 490, 525
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.