Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

53072033 .. 53075457

Gene Structure 3425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTGGTGAATGTATCTGTGCATTATGTGCTGCACGCTGGGAACACCAATAAGAATGGTTACAAGCTCATTGCTGCCGAGTTCAGCGGTGTCAATGTTGAGATGGTGAAGGATTTCGAGATGGGTTTGTCGAACAAGACTCCCGAGTTTCTCAAAATGAATCCCATTGGGAAGGTGGGAGTTGTGTCATTTGCAGGTGTTGGAAGTTGTGTTCCTGTGTTGGAAACGCCGGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCATTTGAAGGCGGACAATCCCCTTTACGGTTCTTCCTTGATTGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACATTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCTCTTTGGTTTTGCGATTACAAATACAATGATGCATGAGAAAACAGTCTCATTCGTGACTTTAAACAAGGTGGGCGGCTTTCTGCAGCGGATGGATTTGGCTCGTAGATATGCGTTTGGGAAGATGTTGGTGATTGGATCTGATCCTCCTTTCAAGGGGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGATATGGAACTGTATGATTGGCATAAGGTTGATATCACTGATGAGGATCAAAAGGAGCACGTGAACCAGATGATTGAAGTTCAGGAGCCTTTTGAGGGGGAGGCCTTGTTGGATGCCAAATGCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

269

Amino Acids

30.26

Weight (kDa)

5.19

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	9 - 91	2.8e-08	Glutathione S-transferase, N-terminal domain
EF1G	PF00647	164 - 216	1.6e-13	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	2 cut(s)	265, 397
AciI	CCGC	5 cut(s)	87, 287, 395, 534, 547
AclWI	GGATC	4 cut(s)	439, 596, 604, 732
AcvI	CACGTG	1 cut(s)	739
AfiI	CCNNNNNNNGG	6 cut(s)	302, 401, 424, 431, 614, 773
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	5 cut(s)	283, 320, 613, 755, 805
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	4 cut(s)	439, 596, 604, 732
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	31, 74, 544
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	19, 118, 601
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	3 cut(s)	18, 61, 556
BccI	CCATC	3 cut(s)	97, 115, 544
BcoDI	GTCTC	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	32, 75, 535, 545
BlsI	GCNGC	4 cut(s)	33, 76, 536, 546
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	651, 765
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	3 cut(s)	358, 480, 781
BmuI	ACTGGG	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BsaAI	YACGTR	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	637
BsaXI	ACNNNNNCTCC	2 cut(s)	770, 800
Bsc4I	CCNNNNNNNGG	6 cut(s)	302, 401, 424, 431, 614, 773
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	4 cut(s)	69, 258, 259, 344
Bse8I	GATNNNNATC	1 cut(s)	723
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	2 cut(s)	555, 796
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	6 cut(s)	302, 401, 424, 431, 614, 773
BseMI	GCAATG	4 cut(s)	69, 258, 259, 344
BseNI	ACTGG	1 cut(s)	655
BseXI	GCAGC	3 cut(s)	18, 61, 556
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	265, 397
BshFI	GGCC	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	738
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	230, 425
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	6 cut(s)	302, 401, 424, 431, 614, 773
BsmAI	GTCTC	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp143I	GATC	4 cut(s)	444, 596, 601, 724
BspACI	CCGC	5 cut(s)	87, 287, 395, 534, 547
BspANI	GGCC	1 cut(s)	782
BspFNI	CGCG	2 cut(s)	265, 397
BspLI	GGNNCC	2 cut(s)	651, 765
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	4 cut(s)	439, 596, 604, 732
BsrDI	GCAATG	4 cut(s)	69, 258, 259, 344
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	4 cut(s)	444, 596, 601, 724
Bst4CI	ACNGT	4 cut(s)	236, 305, 505, 690
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	2 cut(s)	555, 796
BstFNI	CGCG	2 cut(s)	265, 397
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	4 cut(s)	447, 599, 604, 727
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	4 cut(s)	444, 596, 601, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	2 cut(s)	265, 397
BstV1I	GCAGC	3 cut(s)	18, 61, 556
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	555, 796
BtsIMutI	CAGTG	1 cut(s)	714
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	2 cut(s)	438, 494
CviJI	RGCY	8 cut(s)	67, 428, 537, 560, 624, 631, 766, 782
CviKI_1	RGCY	8 cut(s)	67, 428, 537, 560, 624, 631, 766, 782
DpnI	GATC	4 cut(s)	446, 598, 603, 726
DpnII	GATC	4 cut(s)	444, 596, 601, 724
DraI	TTTAAA	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	495
FaeI	CATG	2 cut(s)	441, 497
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	437, 493
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	4 cut(s)	32, 75, 535, 545
FokI	GGATG	2 cut(s)	562, 803
Fsp4HI	GCNGC	4 cut(s)	32, 75, 535, 545
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	4 cut(s)	32, 75, 535, 545
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	2 cut(s)	230, 425
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	441, 497
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	139, 160
HpaII	CCGG	2 cut(s)	230, 425
HphI	GGTGA	3 cut(s)	19, 118, 601
Hpy166II	GTNNAC	2 cut(s)	415, 742
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	5 cut(s)	118, 143, 448, 514, 761
Hpy8I	GTNNAC	2 cut(s)	415, 742
HpyAV	CCTTC	5 cut(s)	103, 166, 277, 428, 613
HpyCH4III	ACNGT	4 cut(s)	236, 305, 505, 690
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	7 cut(s)	22, 34, 194, 353, 410, 493, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	738
Hsp92II	CATG	2 cut(s)	441, 497
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	4 cut(s)	444, 596, 601, 724
LmnI	GCTCC	3 cut(s)	334, 733, 763
Lsp1109I	GCAGC	3 cut(s)	18, 61, 556
LweI	GCATC	3 cut(s)	358, 480, 781
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	4 cut(s)	59, 271, 454, 514
MalI	GATC	4 cut(s)	446, 598, 603, 726
MboI	GATC	4 cut(s)	444, 596, 601, 724
MboII	GAAGA	2 cut(s)	300, 592
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	3 cut(s)	181, 201, 768
MnlI	CCTC	7 cut(s)	432, 444, 615, 640, 715, 766, 772
Mph1103I	ATGCAT	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	87, 547
MspI	CCGG	2 cut(s)	230, 425
MvnI	CGCG	2 cut(s)	265, 397
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	4 cut(s)	444, 596, 601, 724
NlaIII	CATG	2 cut(s)	441, 497
NlaIV	GGNNCC	2 cut(s)	651, 765
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	782
PciI	ACATGT	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	33, 76, 536, 546
PleI	GAGTC	1 cut(s)	133
PmaCI	CACGTG	1 cut(s)	739
PmlI	CACGTG	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	739
PscI	ACATGT	1 cut(s)	437
PspCI	CACGTG	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	651, 765
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	596
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	4 cut(s)	32, 75, 535, 545
Sau3AI	GATC	4 cut(s)	444, 596, 601, 724
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	738
SetI	ASST	8 cut(s)	69, 177, 199, 420, 531, 651, 708, 741
SfaNI	GCATC	3 cut(s)	358, 480, 781
SfcI	CTRYAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	1 cut(s)	663
SseBI	AGGCCT	1 cut(s)	782
SsiI	CCGC	5 cut(s)	87, 287, 395, 534, 547
SspI	AATATT	1 cut(s)	376
StuI	AGGCCT	1 cut(s)	782
TaaI	ACNGT	4 cut(s)	236, 305, 505, 690
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	2 cut(s)	117, 131
TasI	AATT	1 cut(s)	663
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	31, 74, 544
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	4 cut(s)	173, 379, 649, 684
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.