Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

54581217 .. 54581477

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG409200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTGGTGATTGGCTCTGAGCCTTCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCACAGGCAAGAAATTCCCCAGTTCATAATGGATGAGTGTTATGACATGAAACTGTATGATTGGCGGAAGGTTGATATCACATATGAGGATCAAAAAGAGCGTGTGAATCAGATGATTGAAGATCATGAGCCCTTTGAGGGGGAGCCATTGTTGGATGCCAAATGTTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

86

Amino Acids

10.4

Weight (kDa)

4.94

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	224, 225
AgsI	TTSAA	3 cut(s)	64, 206, 256
AlwI	GGATC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	52, 79
BanII	GRGCYC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 225
Bse1I	ACTGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	124, 247
BseLI	CCNNNNNNNGG	2 cut(s)	224, 225
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	224, 225
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	175, 208
BspACI	CCGC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	175, 208
Bst4CI	ACNGT	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	124, 247
BstKTI	GATC	2 cut(s)	178, 211
BstMBI	GATC	2 cut(s)	175, 208
BtsCI	GGATG	2 cut(s)	124, 247
CciI	TCATGA	1 cut(s)	211
CviAII	CATG	2 cut(s)	133, 212
CviJI	RGCY	7 cut(s)	11, 48, 55, 75, 82, 217, 232
CviKI_1	RGCY	7 cut(s)	11, 48, 55, 75, 82, 217, 232
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	177, 210
DpnII	GATC	2 cut(s)	175, 208
EciI	GGCGGA	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	2 cut(s)	136, 215
FaiI	YATR	8 cut(s)	21, 113, 129, 134, 144, 169, 171, 213
FatI	CATG	2 cut(s)	132, 211
FauNDI	CATATG	1 cut(s)	169
FokI	GGATG	2 cut(s)	131, 254
FriOI	GRGCYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	136, 215
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	2 cut(s)	52, 79
Hpy188I	TCNGA	2 cut(s)	52, 198
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	64, 66, 148
HpyCH4III	ACNGT	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	136, 215
Kzo9I	GATC	2 cut(s)	175, 208
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	2 cut(s)	76, 119
LweI	GCATC	1 cut(s)	232
MalI	GATC	2 cut(s)	177, 210
MboI	GATC	2 cut(s)	175, 208
MboII	GAAGA	2 cut(s)	43, 218
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	2 cut(s)	166, 217
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	2 cut(s)	175, 208
NlaIII	CATG	2 cut(s)	136, 215
NlaIV	GGNNCC	1 cut(s)	231
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	175, 208
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	2 cut(s)	69, 159
SfaNI	GCATC	1 cut(s)	232
SgeI	CNNG	9 cut(s)	24, 76, 88, 103, 107, 118, 145, 200, 224
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	141
TasI	AATT	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	100, 149
XapI	RAATTY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.