Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018024.1

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 366

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018024.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 302 bp

ttattcaaaattcggggggtgacagtggctttctgcaggggatggatttggctcgtagatatgcgtttgggaagatgttggtgattggatctgatcctcctttcaaggggaagggcttgtggctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgatatggaactgtatgattggcataaggttgatatcactgatgaggatcaaaaggagcacgtgaaccagatgattgaagttcaggagccttttgagggggaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

4.49

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	88, 96, 224
AcsI	RAATTY	1 cut(s)	9
AcvI	CACGTG	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	106, 265
AgsI	TTSAA	4 cut(s)	7, 105, 247, 297
Alw21I	GWGCWC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	88, 96, 224
AoxI	GGCC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	31, 93
BbrPI	CACGTG	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	230
BccI	CCATC	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	143, 257
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 265
Bse1I	ACTGG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	47, 288
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	106, 265
BseNI	ACTGG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	106, 265
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	88, 93, 216
BspANI	GGCC	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	143, 257
BspMAI	CTGCAG	1 cut(s)	38
BspPI	GGATC	3 cut(s)	88, 96, 224
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	88, 93, 216
Bst4CI	ACNGT	2 cut(s)	25, 182
BstBAI	YACGTR	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	47, 288
BstKTI	GATC	3 cut(s)	91, 96, 219
BstMBI	GATC	3 cut(s)	88, 93, 216
BstSFI	CTRYAG	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	47, 288
BtsIMutI	CAGTG	2 cut(s)	30, 206
CviJI	RGCY	6 cut(s)	29, 52, 116, 123, 258, 274
CviKI_1	RGCY	6 cut(s)	29, 52, 116, 123, 258, 274
DpnI	GATC	3 cut(s)	90, 95, 218
DpnII	GATC	3 cut(s)	88, 93, 216
Eco147I	AGGCCT	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	204
FaiI	YATR	6 cut(s)	62, 154, 170, 175, 185, 194
FokI	GGATG	2 cut(s)	54, 295
HaeIII	GGCC	1 cut(s)	274
HphI	GGTGA	2 cut(s)	31, 93
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	25, 182
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	88, 93, 216
LmnI	GCTCC	2 cut(s)	225, 255
LpnPI	CCDG	4 cut(s)	22, 160, 238, 250
LweI	GCATC	1 cut(s)	273
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	90, 95, 218
MboI	GATC	3 cut(s)	88, 93, 216
MboII	GAAGA	1 cut(s)	84
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	2 cut(s)	9, 155
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	107, 132, 207, 258, 264
NdeII	GATC	3 cut(s)	88, 93, 216
NlaIV	GGNNCC	2 cut(s)	143, 257
NmuCI	GTSAC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	274
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	231
PspCI	CACGTG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	143, 257
PstI	CTGCAG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	88, 93, 216
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	3 cut(s)	143, 200, 233
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	9, 155
SseBI	AGGCCT	1 cut(s)	274
StuI	AGGCCT	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	25, 182
TaiI	ACGT	1 cut(s)	233
TasI	AATT	2 cut(s)	9, 155
TscAI	CASTG	2 cut(s)	30, 213
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	141, 176
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	30, 213
XapI	RAATTY	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.