Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010898.1

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

15709 .. 16029

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010898.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgcatgagaatacagtctcattcgtgactttaaacaaggtgggcggctttctgcagcggatggatttggctcgtagatatgcgtttgggaagatgttggtgattggatctgagcctcctttcaaggggaagggcttgtggctgttccgtgggcaagaggttccccagttcataattgttgaatgttatgatatggaactgtatgattggcataaggttgatatcactgatgaggatcaaaaggagcacgtgaaccagatgattgaagatcaggagccttttgagggagaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

106

Amino Acids

12.42

Weight (kDa)

4.86

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	45, 58
AclWI	GGATC	2 cut(s)	115, 243
AcvI	CACGTG	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	125, 284
AgsI	TTSAA	4 cut(s)	124, 182, 266, 316
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	115, 243
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	112
BbrPI	CACGTG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	46, 56
BlsI	GCNGC	2 cut(s)	47, 57
BmiI	GGNNCC	2 cut(s)	162, 276
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 284
Bse1I	ACTGG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	66, 307
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	125, 284
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	125, 284
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	107, 235, 268
BspACI	CCGC	2 cut(s)	45, 58
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	162, 276
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	2 cut(s)	115, 243
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	107, 235, 268
Bst4CI	ACNGT	2 cut(s)	16, 201
BstBAI	YACGTR	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	66, 307
BstKTI	GATC	3 cut(s)	110, 238, 271
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	107, 235, 268
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	66, 307
BtsIMutI	CAGTG	1 cut(s)	225
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	7 cut(s)	48, 71, 115, 135, 142, 277, 293
CviKI_1	RGCY	7 cut(s)	48, 71, 115, 135, 142, 277, 293
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	109, 237, 270
DpnII	GATC	3 cut(s)	107, 235, 268
DraI	TTTAAA	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	223
Eco72I	CACGTG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FaiI	YATR	7 cut(s)	6, 81, 173, 189, 194, 204, 213
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	46, 56
FokI	GGATG	2 cut(s)	73, 314
Fsp4HI	GCNGC	2 cut(s)	46, 56
GluI	GCNGC	2 cut(s)	46, 56
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	25, 272
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	16, 201
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	4, 55
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	107, 235, 268
LmnI	GCTCC	2 cut(s)	244, 274
LpnPI	CCDG	3 cut(s)	179, 257, 269
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	109, 237, 270
MboI	GATC	3 cut(s)	107, 235, 268
MboII	GAAGA	2 cut(s)	103, 278
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	5 cut(s)	126, 151, 226, 277, 283
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	58
NdeII	GATC	3 cut(s)	107, 235, 268
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	162, 276
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	47, 57
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	162, 276
PstI	CTGCAG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	46, 56
Sau3AI	GATC	3 cut(s)	107, 235, 268
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	4 cut(s)	42, 162, 219, 252
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	174
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	45, 58
StuI	AGGCCT	1 cut(s)	293
TaaI	ACNGT	2 cut(s)	16, 201
TaiI	ACGT	1 cut(s)	252
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.