Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

53428584 .. 53432751

Gene Structure 4168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCAATTACAATTACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGTGGATGGATTTGGCTCGCAAAATATGCGTTTGGAAAGATGTTGGTGATTGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

80

Amino Acids

9.66

Weight (kDa)

4.89

Isoelectric Point (pI)

21.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	1 - 70	1.5e-23	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	33, 163
AlwI	GGATC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	242
BccI	CCATC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BseGI	GGATG	2 cut(s)	16, 195
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	83
BssMI	GATC	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	16, 195
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	16, 195
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	202
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	3 cut(s)	25, 72, 200
CviKI_1	RGCY	3 cut(s)	25, 72, 200
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
FaeI	CATG	1 cut(s)	85
FaiI	YATR	3 cut(s)	83, 87, 211
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	81
FokI	GGATG	2 cut(s)	23, 202
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	8, 92
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	117, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	2 cut(s)	61, 105
MaeIII	GTNAC	2 cut(s)	98, 154
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MluCI	AATT	2 cut(s)	118, 124
MnlI	CCTC	2 cut(s)	49, 88
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	85
PciI	ACATGT	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	4
PscI	ACATGT	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	2 cut(s)	60, 171
SfcI	CTRYAG	1 cut(s)	182
SgeI	CNNG	7 cut(s)	20, 65, 88, 94, 104, 178, 213
Sse9I	AATT	2 cut(s)	118, 124
SsiI	CCGC	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	145
TasI	AATT	2 cut(s)	118, 124
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	27, 138, 150
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	191
XceI	RCATGY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.