Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004110.1

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

34850 .. 35251

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004110.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgtatgatcccgaaggttactctctttggttttgcgagtacaagtacaatgatgaaaatactgtttcattcgtcactctgaataaggtgggcggttttctacagcaaatggatttggctcgtaagtatgcttttgggaagatgttggtgattggctctgagccttctttcaaggtgaagggcttgtggctgttccacaggcaagaaattccgcagttcataatggatgagtgttatgacatgaaactgtatgattggcggaaggttgatatcacatatgaggatcaaaaagagcgtgtgaatcagatgattgaagatcataagccctttgaggggggagccattgttgaatgccaaatttttcaactgatgggaataggtttttccaagaggttaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

133

Amino Acids

15.86

Weight (kDa)

5.2

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	93, 212, 259
AclWI	GGATC	2 cut(s)	2, 291
AcsI	RAATTY	2 cut(s)	207, 357
AfaI	GTAC	2 cut(s)	41, 47
AfiI	CCNNNNNNNGG	2 cut(s)	332, 333
AgsI	TTSAA	4 cut(s)	172, 314, 350, 365
AlwI	GGATC	2 cut(s)	2, 291
ApoI	RAATTY	2 cut(s)	207, 357
AsuHPI	GGTGA	2 cut(s)	160, 187
BccI	CCATC	1 cut(s)	364
BfmI	CTRYAG	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 333
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	332, 333
BseMII	CTCAG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	332, 333
BsmI	GAATGC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	7, 283, 316
BspACI	CCGC	3 cut(s)	93, 212, 259
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	2, 291
BssMI	GATC	3 cut(s)	7, 283, 316
Bst4CI	ACNGT	2 cut(s)	64, 249
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	3 cut(s)	10, 286, 319
BstMBI	GATC	3 cut(s)	7, 283, 316
BstSFI	CTRYAG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	40, 46
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	7 cut(s)	119, 156, 163, 183, 190, 325, 341
CviKI_1	RGCY	7 cut(s)	119, 156, 163, 183, 190, 325, 341
CviQI	GTAC	2 cut(s)	40, 46
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	9, 285, 318
DpnII	GATC	3 cut(s)	7, 283, 316
EciI	GGCGGA	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	271
FaeI	CATG	1 cut(s)	244
FaiI	YATR	9 cut(s)	6, 129, 221, 237, 242, 252, 277, 279, 321
FatI	CATG	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	277
FokI	GGATG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	244
HinfI	GANTC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	160, 187
Hpy188I	TCNGA	3 cut(s)	81, 160, 306
Hpy188III	TCNNGA	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	8, 172, 174, 256
HpyCH4III	ACNGT	2 cut(s)	64, 249
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	7, 283, 316
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	17, 73
MalI	GATC	3 cut(s)	9, 285, 318
MboI	GATC	3 cut(s)	7, 283, 316
MboII	GAAGA	2 cut(s)	151, 326
MluCI	AATT	2 cut(s)	207, 357
MnlI	CCTC	3 cut(s)	274, 325, 384
MseI	TTAA	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	7, 283, 316
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	340
RsaI	GTAC	2 cut(s)	41, 47
RsaNI	GTAC	2 cut(s)	40, 46
SaqAI	TTAA	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	7, 283, 316
SetI	ASST	6 cut(s)	19, 90, 177, 267, 382, 395
SfcI	CTRYAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	207, 357
SsiI	CCGC	3 cut(s)	93, 212, 259
TaaI	ACNGT	2 cut(s)	64, 249
TasI	AATT	2 cut(s)	207, 357
TatI	WGTACW	2 cut(s)	39, 45
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	57, 69, 208, 257
XapI	RAATTY	2 cut(s)	207, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.