Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

78490 .. 78809

Gene Structure 320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgcatgagaatacagtctcattcgtgactttaaacaaggtgggcggcttcctgcagcggatggatttggctcgtaaatattcgtttgggaagatgttggtgattggatctgatcctcctttcaaggtggagggattgtggctgttccgtgggcaagagcataaggttgatatcactgatgaggatcaaaaggagcgcgtgaaccagatgattaaagatcaggagccttttgagggggaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

89

Amino Acids

10.31

Weight (kDa)

5.64

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	45, 58
AclWI	GGATC	3 cut(s)	107, 115, 192
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	124, 265
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	3 cut(s)	107, 115, 192
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	46, 56
BlsI	GCNGC	2 cut(s)	47, 57
BmiI	GGNNCC	1 cut(s)	225
BmsI	GCATC	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	66, 256
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	107, 112, 184, 217
BspACI	CCGC	2 cut(s)	45, 58
BspANI	GGCC	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	3 cut(s)	107, 115, 192
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	107, 112, 184, 217
Bst4CI	ACNGT	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	66, 256
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	110, 115, 187, 220
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	107, 112, 184, 217
BstSFI	CTRYAG	1 cut(s)	53
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	66, 256
BtsIMutI	CAGTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	198
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	5 cut(s)	48, 71, 142, 226, 242
CviKI_1	RGCY	5 cut(s)	48, 71, 142, 226, 242
DpnI	GATC	4 cut(s)	109, 114, 186, 219
DpnII	GATC	4 cut(s)	107, 112, 184, 217
DraI	TTTAAA	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FaiI	YATR	2 cut(s)	6, 162
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	46, 56
FokI	GGATG	2 cut(s)	73, 263
Fsp4HI	GCNGC	2 cut(s)	46, 56
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	2 cut(s)	46, 56
HaeIII	GGCC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	25, 221
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	4, 55
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	107, 112, 184, 217
LmnI	GCTCC	2 cut(s)	193, 223
LpnPI	CCDG	3 cut(s)	65, 206, 218
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	4 cut(s)	109, 114, 186, 219
MboI	GATC	4 cut(s)	107, 112, 184, 217
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	124, 126, 175, 226, 232
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	32, 213
MspA1I	CMGCKG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	198
NdeII	GATC	4 cut(s)	107, 112, 184, 217
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	47, 57
PspN4I	GGNNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	32, 213
SatI	GCNGC	2 cut(s)	46, 56
Sau3AI	GATC	4 cut(s)	107, 112, 184, 217
SetI	ASST	3 cut(s)	42, 129, 168
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	53
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	2 cut(s)	45, 58
SspI	AATATT	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	16
TauI	GCSGC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	32, 213
Tru9I	TTAA	2 cut(s)	32, 213
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	181
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.