Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

57920282 .. 57924416

Gene Structure 4135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG442000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTATGATTCAGAGGGTTACTCTCTTTGGTTTTGCGATTACAAATACAATGATGAAAATACAGTTTCATTTGCGACTATGAACAAGGTGGGCGGTTTTCTGCAACGGATGGATTTGGCTCGTAAATATGCACTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGCGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACCGTATGATTGGCGTAAGGTTGATATCACTGATGAGGATCAAAAGAAGCGCGTGAACCAGATGATTGAAGATCATGAGCCTTTTGAGGGAGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

122

Amino Acids

14.43

Weight (kDa)

4.7

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	2 - 69	3.8e-26	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	198, 297
AciI	CCGC	3 cut(s)	93, 196, 198
AclWI	GGATC	2 cut(s)	155, 291
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	172, 314, 364
AlwI	GGATC	2 cut(s)	155, 291
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	160, 187
BccI	CCATC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	210, 246
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	208
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	114, 355
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	214
Bsh1236I	CGCG	2 cut(s)	198, 297
BslI	CCNNNNNNNGG	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	160, 283, 316
BspACI	CCGC	3 cut(s)	93, 196, 198
BspFNI	CGCG	2 cut(s)	198, 297
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	210, 246
BspPI	GGATC	2 cut(s)	155, 291
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	160, 283, 316
Bst4CI	ACNGT	2 cut(s)	64, 249
BstC8I	GCNNGC	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	114, 355
BstFNI	CGCG	2 cut(s)	198, 297
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	163, 286, 319
BstMBI	GATC	3 cut(s)	160, 283, 316
BstUI	CGCG	2 cut(s)	198, 297
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	114, 355
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	200
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	297
Cfr42I	CCGCGG	1 cut(s)	199
CviAII	CATG	2 cut(s)	241, 320
CviJI	RGCY	5 cut(s)	119, 183, 190, 325, 341
CviKI_1	RGCY	5 cut(s)	119, 183, 190, 325, 341
DpnI	GATC	3 cut(s)	162, 285, 318
DpnII	GATC	3 cut(s)	160, 283, 316
Eco32I	GATATC	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	271
FaeI	CATG	2 cut(s)	244, 323
FaiI	YATR	8 cut(s)	6, 80, 129, 221, 237, 242, 252, 321
FatI	CATG	2 cut(s)	240, 319
FauI	CCCGC	1 cut(s)	191
FokI	GGATG	2 cut(s)	121, 362
GlaI	GCGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	244, 323
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	160, 187
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	13, 160
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	64, 249
HpyCH4V	TGCA	2 cut(s)	103, 131
Hsp92II	CATG	2 cut(s)	244, 323
HspAI	GCGC	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	160, 283, 316
LpnPI	CCDG	2 cut(s)	227, 317
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	162, 285, 318
MboI	GATC	3 cut(s)	160, 283, 316
MboII	GAAGA	2 cut(s)	151, 326
MluCI	AATT	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	7, 174, 199, 274, 325, 331
MspA1I	CMGCKG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	198, 297
NdeII	GATC	3 cut(s)	160, 283, 316
NlaIII	CATG	2 cut(s)	244, 323
NlaIV	GGNNCC	2 cut(s)	210, 246
PagI	TCATGA	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	210, 246
SacII	CCGCGG	1 cut(s)	199
Sau3AI	GATC	3 cut(s)	160, 283, 316
SetI	ASST	4 cut(s)	90, 177, 210, 267
SfaNI	GCATC	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	3 cut(s)	93, 196, 198
TaaI	ACNGT	2 cut(s)	64, 249
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	57, 69, 95, 208, 243
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.