Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

55803226 .. 55805109

Gene Structure 1884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG427900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACATGTAATCTGAAGCCGGGATTTAGTCGGTTATTAACAAAAAGTTTTACATCTGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCCTAATTTTTGCAAGATATTGGGGGAGGTGAAACAAGCAGAATCTATTTCAGCTGTTCAGTTAGTGATGAAGCCTTCACAGCCTAAGGAATCTGCAGAAACAAAGGTCAAGGTTCAGACGAATAAAGAGGCCAAGAAAGAACCAACAGAACCTAAAGTAGAAGAATCTGCTCAGGAAGAGGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATACTGGATGAATGGAAAAGACATCATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAAAGGATTCTGGGAAATGTATGATCCCGAAGGTTACTCTCTTTGGTTTTGCGAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTCACTCTGAATAAGGTGGGCGGTTTTCTACAGCAAATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTAGTGATTGGCTCTGAGCCTTCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCACAGGCAAGAAATTCCCCAGTTCATAATGGATGAGTGTTATGACATGAAACTGTATGATTGGCGGAAGGTTGATATCACATATGAGGATCAAAAAGAGCGTGTGAATCAGATGATTGAAGATCATGAGCCCTTTGAGGGGGGAGCCATTGTTGGATGCCAAATGTTTCAACTGATGGGAATAGGTTTTTCCAAGAGGTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

272

Amino Acids

31.75

Weight (kDa)

6.56

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	100 - 207	8e-39	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	2 cut(s)	510, 676
AclWI	GGATC	2 cut(s)	419, 708
AcsI	RAATTY	2 cut(s)	59, 624
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	458, 464
AfiI	CCNNNNNNNGG	2 cut(s)	749, 750
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	4 cut(s)	369, 589, 731, 782
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	2 cut(s)	419, 708
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	59, 624
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	142, 604
AxyI	CCTNAGG	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	744
BccI	CCATC	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	2 cut(s)	195, 518
Bme1390I	CCNGG	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	288, 757
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	625
Bpu10I	CCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	749, 750
Bse1I	ACTGG	2 cut(s)	348, 631
Bse21I	CCTNAGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	352, 649, 773
BseLI	CCNNNNNNNGG	2 cut(s)	749, 750
BseMII	CTCAG	2 cut(s)	287, 567
BseNI	ACTGG	2 cut(s)	348, 631
BseRI	GAGGAG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	749, 750
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp143I	GATC	4 cut(s)	316, 424, 700, 733
BspACI	CCGC	2 cut(s)	510, 676
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	286, 568
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	288, 757
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	2 cut(s)	419, 708
BspT107I	GGYRCC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	348, 631
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	316, 424, 700, 733
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	481, 666
Bst6I	CTCTTC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	186, 273, 576
BstF5I	GGATG	3 cut(s)	352, 649, 773
BstKTI	GATC	4 cut(s)	319, 427, 703, 736
BstMBI	GATC	4 cut(s)	316, 424, 700, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	2 cut(s)	195, 518
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	352, 649, 773
CciI	TCATGA	1 cut(s)	736
Csp6I	GTAC	2 cut(s)	457, 463
CviAII	CATG	4 cut(s)	6, 68, 658, 737
CviQI	GTAC	2 cut(s)	457, 463
DdeI	CTNAG	3 cut(s)	186, 273, 576
DpnI	GATC	4 cut(s)	318, 426, 702, 735
DpnII	GATC	4 cut(s)	316, 424, 700, 733
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	744
Eco32I	GATATC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	4 cut(s)	9, 71, 661, 740
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	4 cut(s)	5, 67, 657, 736
FauNDI	CATATG	1 cut(s)	694
FokI	GGATG	3 cut(s)	359, 656, 780
FriOI	GRGCYC	1 cut(s)	744
FspBI	CTAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	4 cut(s)	9, 71, 661, 740
HinfI	GANTC	6 cut(s)	143, 191, 266, 307, 408, 718
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	142, 604
Hpy188I	TCNGA	6 cut(s)	15, 58, 219, 498, 577, 723
Hpy188III	TCNNGA	4 cut(s)	275, 314, 428, 737
HpyAV	CCTTC	5 cut(s)	186, 425, 589, 591, 673
HpyCH4III	ACNGT	2 cut(s)	481, 666
HpyCH4V	TGCA	2 cut(s)	114, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	186, 273, 576
Hsp92II	CATG	4 cut(s)	9, 71, 661, 740
Kzo9I	GATC	4 cut(s)	316, 424, 700, 733
LmnI	GCTCC	1 cut(s)	755
LpnPI	CCDG	6 cut(s)	33, 260, 329, 397, 601, 644
LweI	GCATC	1 cut(s)	758
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	434, 490
MalI	GATC	4 cut(s)	318, 426, 702, 735
MboI	GATC	4 cut(s)	316, 424, 700, 733
MboII	GAAGA	5 cut(s)	92, 275, 290, 568, 743
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	3 cut(s)	59, 106, 624
MmeI	TCCRAC	1 cut(s)	745
MseI	TTAA	4 cut(s)	38, 96, 402, 812
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	4 cut(s)	316, 424, 700, 733
NlaIII	CATG	4 cut(s)	9, 71, 661, 740
NlaIV	GGNNCC	2 cut(s)	288, 757
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	9
PagI	TCATGA	1 cut(s)	736
PciI	ACATGT	1 cut(s)	5
PfeI	GAWTC	6 cut(s)	143, 191, 266, 307, 408, 718
PscI	ACATGT	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	288, 757
PstI	CTGCAG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	458, 464
RsaNI	GTAC	2 cut(s)	457, 463
SaqAI	TTAA	4 cut(s)	38, 96, 402, 812
Sau3AI	GATC	4 cut(s)	316, 424, 700, 733
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	1 cut(s)	758
SfcI	CTRYAG	2 cut(s)	195, 518
Sse9I	AATT	3 cut(s)	59, 106, 624
SsiI	CCGC	2 cut(s)	510, 676
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	481, 666
TasI	AATT	3 cut(s)	59, 106, 624
TatI	WGTACW	2 cut(s)	456, 462
TfiI	GAWTC	6 cut(s)	143, 191, 266, 307, 408, 718
Tru1I	TTAA	4 cut(s)	38, 96, 402, 812
Tru9I	TTAA	4 cut(s)	38, 96, 402, 812
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	6 cut(s)	185, 363, 474, 486, 625, 674
TspGWI	ACGGA	1 cut(s)	377
XapI	RAATTY	2 cut(s)	59, 624
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.