Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007557.1

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3554

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

aacacgcgacccgttttggcgacccggccggaactcctctatcggggcgatgaaacggctgagcattggtgccgttgggctgctcgcttcattgtcaacctcctggtggtcttggatcatccatatgttggacaaggaagcagaatcgaagccgggaaagcttcgggttctccggcggttcttcggcgacatgttgagctgcatgaggtgctgcacgctgggaacaccaataagaatggttacaaggcactcattgctgctgagttcagcggtgtcaatgttgagctggtgaaggatttcgagatgggtttgtcgaacaagactcccgagtttctcaaaatgaatcccattgggaaggttcctgtgttggaaacgcaggacggtcctgcttttgagagcaatgccattgcgcgatatgttactcatttgaaggcggacaatcccctttacggttcttccttgattgaatatgcccttgtggagcaatggattgattttgcaacattagagattgatgccaatattttgcgttggttcataccgcgtatcggttttgcagtctaccttcctccggcttctgggacatgtatgatccagagggttactctctttggttttgcgattacaaatacaatgatgcatgagaatacagtctcattcgtgactttaaacaaggtgagcggttttctgcagcggatggatttggctcgtagatatgcgtttgggaagatgttggtgattggatctgatcctcctttcaaggggaagggcttgtggctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgatatggaactgtatgattggcataaggttgatatcactgatgaggatcaaaaggagcacgtgaaccagatgattgaagttcaggagccttttgagggggaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

318

Amino Acids

36.03

Weight (kDa)

5.54

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	3 cut(s)	7, 412, 544
AciI	CCGC	6 cut(s)	176, 270, 434, 542, 681, 694
AclWI	GGATC	5 cut(s)	123, 586, 743, 751, 879
AcoI	YGGCCR	1 cut(s)	26
AcvI	CACGTG	1 cut(s)	886
AfiI	CCNNNNNNNGG	9 cut(s)	43, 106, 128, 449, 548, 571, 578, 761, 920
AflIII	ACRYGT	2 cut(s)	190, 584
AgsI	TTSAA	5 cut(s)	430, 467, 760, 902, 952
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	161, 199, 286
AluI	AGCT	3 cut(s)	161, 199, 286
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	5 cut(s)	123, 586, 743, 751, 879
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	26, 927
ApeKI	GCWGC	5 cut(s)	80, 199, 211, 257, 691
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	2 cut(s)	25, 154
AsuHPI	GGTGA	3 cut(s)	301, 688, 748
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	69
BbrPI	CACGTG	1 cut(s)	886
Bbv12I	GWGCWC	1 cut(s)	885
BbvI	GCAGC	5 cut(s)	67, 186, 198, 244, 703
BccI	CCATC	2 cut(s)	298, 691
BceAI	ACGGC	2 cut(s)	57, 72
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	25, 154
BcoDI	GTCTC	1 cut(s)	658
BfmI	CTRYAG	1 cut(s)	689
BisI	GCNGC	5 cut(s)	81, 200, 212, 258, 692
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	5 cut(s)	82, 201, 213, 259, 693
Bme1390I	CCNGG	3 cut(s)	25, 104, 154
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	4 cut(s)	71, 360, 798, 912
BmrFI	CCNGG	3 cut(s)	25, 104, 154
BmrI	ACTGGG	1 cut(s)	796
BmsI	GCATC	3 cut(s)	505, 627, 928
BmuI	ACTGGG	1 cut(s)	796
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	25, 154
BsaAI	YACGTR	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	784
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	9 cut(s)	43, 106, 128, 449, 548, 571, 578, 761, 920
Bse1I	ACTGG	1 cut(s)	802
Bse3DI	GCAATG	4 cut(s)	252, 405, 406, 491
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	3 cut(s)	118, 702, 943
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	9 cut(s)	43, 106, 128, 449, 548, 571, 578, 761, 920
BseMI	GCAATG	4 cut(s)	252, 405, 406, 491
BseMII	CTCAG	2 cut(s)	51, 252
BseNI	ACTGG	1 cut(s)	802
BseRI	GAGGAG	1 cut(s)	26
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	67, 186, 198, 244, 703
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	3 cut(s)	7, 412, 544
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	28, 929
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	885
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	5 cut(s)	25, 29, 153, 173, 572
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	9 cut(s)	43, 106, 128, 449, 548, 571, 578, 761, 920
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	28, 929
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	115, 591, 743, 748, 871
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	6 cut(s)	176, 270, 434, 542, 681, 694
BspANI	GGCC	2 cut(s)	28, 929
BspCNI	CTCAG	2 cut(s)	52, 253
BspFNI	CGCG	3 cut(s)	7, 412, 544
BspLI	GGNNCC	4 cut(s)	71, 360, 798, 912
BspMAI	CTGCAG	1 cut(s)	693
BspPI	GGATC	5 cut(s)	123, 586, 743, 751, 879
BspT107I	GGYRCC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	681
BsrDI	GCAATG	4 cut(s)	252, 405, 406, 491
BsrI	ACTGG	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	5 cut(s)	115, 591, 743, 748, 871
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	4 cut(s)	383, 452, 652, 837
BstAPI	GCANNNNNTGC	2 cut(s)	208, 254
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	2 cut(s)	85, 216
BstDEI	CTNAG	2 cut(s)	60, 261
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	3 cut(s)	118, 702, 943
BstFNI	CGCG	3 cut(s)	7, 412, 544
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	5 cut(s)	118, 594, 746, 751, 874
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	5 cut(s)	115, 591, 743, 748, 871
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 208, 254
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	194, 588
BstSCI	CCNGG	3 cut(s)	23, 102, 152
BstSFI	CTRYAG	1 cut(s)	689
BstUI	CGCG	3 cut(s)	7, 412, 544
BstV1I	GCAGC	5 cut(s)	67, 186, 198, 244, 703
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	28, 929
BtgI	CCRYGG	1 cut(s)	784
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	118, 702, 943
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	2 cut(s)	85, 216
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	383
CviAII	CATG	4 cut(s)	191, 203, 585, 641
DdeI	CTNAG	2 cut(s)	60, 261
DpnI	GATC	5 cut(s)	117, 593, 745, 750, 873
DpnII	GATC	5 cut(s)	115, 591, 743, 748, 871
DraI	TTTAAA	1 cut(s)	669
EaeI	YGGCCR	1 cut(s)	26
EagI	CGGCCG	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	449
EclXI	CGGCCG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	929
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	1 cut(s)	383
Eco52I	CGGCCG	1 cut(s)	26
Eco72I	CACGTG	1 cut(s)	886
Eco88I	CYCGRG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	859
EcoT22I	ATGCAT	1 cut(s)	642
FaeI	CATG	4 cut(s)	194, 206, 588, 644
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	4 cut(s)	190, 202, 584, 640
FauNDI	CATATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	81, 200, 212, 258, 692
FokI	GGATG	3 cut(s)	105, 709, 950
Fsp4HI	GCNGC	5 cut(s)	81, 200, 212, 258, 692
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	5 cut(s)	81, 200, 212, 258, 692
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	28, 929
HapII	CCGG	5 cut(s)	25, 29, 153, 173, 572
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	4 cut(s)	194, 206, 588, 644
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	3 cut(s)	144, 322, 343
HpaII	CCGG	5 cut(s)	25, 29, 153, 173, 572
HphI	GGTGA	3 cut(s)	301, 688, 748
Hpy166II	GTNNAC	3 cut(s)	97, 562, 889
Hpy188I	TCNGA	1 cut(s)	748
Hpy188III	TCNNGA	5 cut(s)	301, 326, 595, 661, 908
Hpy8I	GTNNAC	3 cut(s)	97, 562, 889
HpyAV	CCTTC	5 cut(s)	286, 349, 424, 575, 760
HpyCH4III	ACNGT	4 cut(s)	383, 452, 652, 837
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	6 cut(s)	202, 214, 500, 557, 640, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 208, 254
HpyF3I	CTNAG	2 cut(s)	60, 261
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	4 cut(s)	194, 206, 588, 644
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	5 cut(s)	115, 591, 743, 748, 871
LmnI	GCTCC	3 cut(s)	481, 880, 910
Lsp1109I	GCAGC	5 cut(s)	67, 186, 198, 244, 703
LweI	GCATC	3 cut(s)	505, 627, 928
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	4 cut(s)	239, 418, 601, 661
MalI	GATC	5 cut(s)	117, 593, 745, 750, 873
MbiI	CCGCTC	1 cut(s)	681
MboI	GATC	5 cut(s)	115, 591, 743, 748, 871
MboII	GAAGA	3 cut(s)	173, 447, 739
MflI	RGATCY	1 cut(s)	743
MhlI	GDGCHC	1 cut(s)	885
MluCI	AATT	1 cut(s)	810
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	3 cut(s)	109, 348, 915
Mph1103I	ATGCAT	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	270, 694
MspI	CCGG	5 cut(s)	25, 29, 153, 173, 572
MspR9I	CCNGG	3 cut(s)	25, 104, 154
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	3 cut(s)	7, 412, 544
MwoI	GCNNNNNNNGC	3 cut(s)	158, 208, 254
NciI	CCSGG	2 cut(s)	25, 154
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	5 cut(s)	115, 591, 743, 748, 871
NlaIII	CATG	4 cut(s)	194, 206, 588, 644
NlaIV	GGNNCC	4 cut(s)	71, 360, 798, 912
NmuCI	GTSAC	1 cut(s)	661
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	2 cut(s)	194, 588
PceI	AGGCCT	1 cut(s)	929
PciI	ACATGT	2 cut(s)	190, 584
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	144, 343
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	82, 201, 213, 259, 693
PleI	GAGTC	1 cut(s)	316
PmaCI	CACGTG	1 cut(s)	886
PmlI	CACGTG	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	886
PscI	ACATGT	2 cut(s)	190, 584
Psp6I	CCWGG	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	886
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	71, 360, 798, 912
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	5 cut(s)	81, 200, 212, 258, 692
Sau3AI	GATC	5 cut(s)	115, 591, 743, 748, 871
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	3 cut(s)	25, 104, 154
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	3 cut(s)	505, 627, 928
SfcI	CTRYAG	1 cut(s)	689
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	810
SseBI	AGGCCT	1 cut(s)	929
SsiI	CCGC	6 cut(s)	176, 270, 434, 542, 681, 694
SspI	AATATT	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	929
StyD4I	CCNGG	3 cut(s)	23, 102, 152
TaaI	ACNGT	4 cut(s)	383, 452, 652, 837
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	3 cut(s)	147, 300, 314
TasI	AATT	1 cut(s)	810
TfiI	GAWTC	2 cut(s)	144, 343
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	5 cut(s)	80, 199, 211, 257, 691
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	6 cut(s)	66, 79, 356, 526, 796, 831
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	383
XceI	RCATGY	2 cut(s)	194, 588
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.