Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

53653080 .. 53654965

Gene Structure 1886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTATGCTGTTTACCTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCCTAATTTTCGCAAGATATTGGGGGAGGTGAAACAAGCAGAATCTATTCCAGCTGTTCAGTTAGTGATGAAGCCTTCACAGCCTAAGGAATCTGCAGAAACAAAGGTCAAGGTTCAGACGAATAAAGAGGCCAAGAAAGAACCAACAGAACCTAAAGTAGAAGAGTCTGCTCAGGAAGAGGAGGCACCCAAGACCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATATTGGATGAATGGAAAAGACTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAGGGGTTACTCTCTTTGGTTTTGCAAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTCACTCTGAATAAGGTGGGCGGTTTTCTACAGCAAATGGATTTGGCTTGTAAGTATGCTTTTGGGAAGATGTTGGTGATTGGCTCTGAGACTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGCGGGCAAGAAATTCCCCAGTTCATAATGGATGAGTGTTATGACATGAAACTGTATGATTGGCGGAAGGTTGATATCACTGATGAGGATCAAAAAGAGCGTGTGAATCAGATGATTGAAGATCATGAGCCCTTTGAGGGGGAGCCATTGTTGGATGCCAAATGTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

238

Amino Acids

27.81

Weight (kDa)

6.25

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	86 - 185	1.1e-32	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccII	CGCG	1 cut(s)	546
AciI	CCGC	4 cut(s)	441, 544, 546, 607
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	2 cut(s)	389, 395
AfiI	CCNNNNNNNGG	2 cut(s)	680, 681
AgsI	TTSAA	4 cut(s)	327, 520, 662, 712
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	100, 508, 535
AxyI	CCTNAGG	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	153, 449
BmiI	GGNNCC	2 cut(s)	246, 687
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	255, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 681
Bse1I	ACTGG	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	255, 544
BseGI	GGATG	3 cut(s)	310, 580, 703
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	680, 681
BseMII	CTCAG	2 cut(s)	245, 498
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	680, 681
BsmAI	GTCTC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	274, 631, 664
BspACI	CCGC	4 cut(s)	441, 544, 546, 607
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	244, 499
BspFNI	CGCG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	246, 687
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	255, 544
BssMI	GATC	3 cut(s)	274, 631, 664
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	412, 597
Bst6I	CTCTTC	2 cut(s)	216, 231
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	3 cut(s)	144, 231, 507
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	310, 580, 703
BstFNI	CGCG	1 cut(s)	546
BstKTI	GATC	3 cut(s)	277, 634, 667
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	3 cut(s)	274, 631, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	153, 449
BstUI	CGCG	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	310, 580, 703
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	667
Cfr42I	CCGCGG	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	388, 394
CviAII	CATG	3 cut(s)	26, 589, 668
CviQI	GTAC	2 cut(s)	388, 394
DdeI	CTNAG	3 cut(s)	144, 231, 507
DpnI	GATC	3 cut(s)	276, 633, 666
DpnII	GATC	3 cut(s)	274, 631, 664
Eam1104I	CTCTTC	2 cut(s)	216, 231
EarI	CTCTTC	2 cut(s)	216, 231
EciI	GGCGGA	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	675
Eco32I	GATATC	1 cut(s)	619
Eco81I	CCTNAGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	29, 592, 671
FaiI	YATR	8 cut(s)	9, 27, 477, 569, 585, 590, 600, 669
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	3 cut(s)	25, 588, 667
FauI	CCCGC	1 cut(s)	539
FokI	GGATG	3 cut(s)	317, 587, 710
FriOI	GRGCYC	1 cut(s)	675
FspBI	CTAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	29, 592, 671
HinfI	GANTC	6 cut(s)	101, 149, 224, 265, 511, 649
HphI	GGTGA	3 cut(s)	100, 508, 535
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	177, 429, 508, 654
Hpy188III	TCNNGA	3 cut(s)	233, 272, 668
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	29, 144, 520, 604
HpyCH4III	ACNGT	2 cut(s)	412, 597
HpyCH4V	TGCA	2 cut(s)	155, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	144, 231, 507
Hsp92II	CATG	3 cut(s)	29, 592, 671
KspI	CCGCGG	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	274, 631, 664
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	3 cut(s)	123, 218, 575
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	365, 421
MalI	GATC	3 cut(s)	276, 633, 666
MboI	GATC	3 cut(s)	274, 631, 664
MboII	GAAGA	5 cut(s)	50, 233, 248, 499, 674
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	2 cut(s)	64, 555
MlyI	GAGTC	2 cut(s)	233, 505
MmeI	TCCRAC	1 cut(s)	675
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	113, 546
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	274, 631, 664
NlaIII	CATG	3 cut(s)	29, 592, 671
NlaIV	GGNNCC	2 cut(s)	246, 687
NmuCI	GTSAC	1 cut(s)	421
PagI	TCATGA	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	101, 149, 265, 649
PleI	GAGTC	2 cut(s)	232, 505
PpsI	GAGTC	2 cut(s)	232, 505
PspN4I	GGNNCC	2 cut(s)	246, 687
PstI	CTGCAG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	389, 395
RsaNI	GTAC	2 cut(s)	388, 394
SacII	CCGCGG	1 cut(s)	547
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	274, 631, 664
SchI	GAGTC	2 cut(s)	233, 505
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	2 cut(s)	153, 449
Sfr303I	CCGCGG	1 cut(s)	547
SgrBI	CCGCGG	1 cut(s)	547
Sse9I	AATT	2 cut(s)	64, 555
SsiI	CCGC	4 cut(s)	441, 544, 546, 607
SspMI	CTAG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	412, 597
TasI	AATT	2 cut(s)	64, 555
TatI	WGTACW	2 cut(s)	387, 393
TfiI	GAWTC	4 cut(s)	101, 149, 265, 649
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	6 cut(s)	143, 321, 405, 417, 556, 605
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	628
XapI	RAATTY	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.