Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002545.1

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

27638 .. 28868

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002545.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaggaagaagaatcgaagccggaaagcttcgggttctcaggcggttcttctacagctctggcgacgtgttgagctgcatgaggcttctgggacatgtatgatccagagggctactctctttgattttgctattacaaatacaatgatgcatgagaatacagtctcattcgtgactttaaacaaggtgggcggctttctgcagcggatggatttggctcgtaaatatgcgtttgggaagatgttggtgattggatctgatcctcctttcaagcataaggttgatatcactgatgaggatcaaaaggagcgcgtgaaccagatgattaaagatcaggagccttttgagggggaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

127

Amino Acids

14.61

Weight (kDa)

9.39

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	44, 192, 205
AclWI	GGATC	4 cut(s)	97, 254, 262, 306
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	2 cut(s)	67, 95
AgsI	TTSAA	2 cut(s)	271, 379
AjiI	CACGTC	1 cut(s)	68
AluBI	AGCT	3 cut(s)	29, 58, 76
AluI	AGCT	3 cut(s)	29, 58, 76
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	4 cut(s)	97, 254, 262, 306
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	76, 202
AspLEI	GCGC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	63, 214
BccI	CCATC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	2 cut(s)	53, 200
BisI	GCNGC	3 cut(s)	77, 193, 203
BlsI	GCNGC	3 cut(s)	78, 194, 204
BmgBI	CACGTC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	138, 355
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BsaBI	GATNNNNATC	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	297
BseGI	GGATG	2 cut(s)	213, 370
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	63, 214
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	102, 254, 259, 298, 331
BspACI	CCGC	3 cut(s)	44, 192, 205
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	4 cut(s)	97, 254, 262, 306
BssMI	GATC	5 cut(s)	102, 254, 259, 298, 331
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	213, 370
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	5 cut(s)	105, 257, 262, 301, 334
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	102, 254, 259, 298, 331
BstNSI	RCATGY	1 cut(s)	99
BstSFI	CTRYAG	2 cut(s)	53, 200
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	63, 214
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	356
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	213, 370
BtsIMutI	CAGTG	1 cut(s)	288
CfoI	GCGC	1 cut(s)	312
CviAII	CATG	3 cut(s)	80, 96, 152
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	5 cut(s)	104, 256, 261, 300, 333
DpnII	GATC	5 cut(s)	102, 254, 259, 298, 331
DraI	TTTAAA	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	153
FaeI	CATG	3 cut(s)	83, 99, 155
FaiI	YATR	6 cut(s)	81, 97, 101, 153, 228, 276
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	3 cut(s)	79, 95, 151
Fnu4HI	GCNGC	3 cut(s)	77, 193, 203
FokI	GGATG	2 cut(s)	220, 377
Fsp4HI	GCNGC	3 cut(s)	77, 193, 203
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	3 cut(s)	77, 193, 203
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	83, 99, 155
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	106, 172, 335
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	79, 151, 202
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	83, 99, 155
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	102, 254, 259, 298, 331
LmnI	GCTCC	2 cut(s)	307, 337
LpnPI	CCDG	7 cut(s)	26, 35, 46, 75, 119, 320, 332
Lsp1109I	GCAGC	2 cut(s)	63, 214
LweI	GCATC	2 cut(s)	138, 355
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	5 cut(s)	104, 256, 261, 300, 333
MboI	GATC	5 cut(s)	102, 254, 259, 298, 331
MboII	GAAGA	4 cut(s)	19, 22, 41, 250
MflI	RGATCY	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	76, 102, 273, 289, 340, 346
Mph1103I	ATGCAT	1 cut(s)	153
MseI	TTAA	2 cut(s)	179, 327
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	312
NdeII	GATC	5 cut(s)	102, 254, 259, 298, 331
NlaIII	CATG	3 cut(s)	83, 99, 155
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	153
NspI	RCATGY	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	356
PciI	ACATGT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	78, 194, 204
PscI	ACATGT	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	179, 327
SatI	GCNGC	3 cut(s)	77, 193, 203
Sau3AI	GATC	5 cut(s)	102, 254, 259, 298, 331
SetI	ASST	6 cut(s)	31, 60, 70, 78, 189, 282
SfaNI	GCATC	2 cut(s)	138, 355
SfcI	CTRYAG	2 cut(s)	53, 200
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	3 cut(s)	44, 192, 205
StuI	AGGCCT	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	16
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	179, 327
Tru9I	TTAA	2 cut(s)	179, 327
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	76, 202
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	295
XceI	RCATGY	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.