Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01050

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Reverse (-)

27008 .. 28804

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAATGGAAAAGACTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAGAGGATTCTGGGAAATGTATGATCCCGAAGGTTATACTCTGGTTCTGCGAGGACAAGTACAATGATGAAAATACTGTTTCATTTGTGACTCTGAATAAGGTGGGCGGTTTTCTACAGCGAATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTGGTGATTGGCTCTGAGCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGCCGGCAAGAAATTCTCCAGTTCATAATGGATGAGTGTTATGACATGGAACTGTATGATTGGCGGAAGGTTGATATCACTGATGAGGATCAAAAAGAGTGTGTGAATCAGATGATTGAAGATCATGAGCCCTTTGAGGGGGAGCCATTGTCGGATGCCAAATGTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

145

Amino Acids

17.14

Weight (kDa)

4.9

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	31 - 92	3.5e-19	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	162, 265, 328
AclWI	GGATC	2 cut(s)	73, 360
AcsI	RAATTY	1 cut(s)	276
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	401, 402
AgsI	TTSAA	4 cut(s)	23, 241, 383, 433
AlwI	GGATC	2 cut(s)	73, 360
ApoI	RAATTY	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	229, 256
BanII	GRGCYC	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	408
BmsI	GCATC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 402
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	351
BseGI	GGATG	2 cut(s)	301, 424
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	401, 402
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	401, 402
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	78, 352, 385
BspACI	CCGC	3 cut(s)	162, 265, 328
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	73, 360
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	267
BssMI	GATC	3 cut(s)	78, 352, 385
Bst4CI	ACNGT	2 cut(s)	133, 318
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	301, 424
BstKTI	GATC	3 cut(s)	81, 355, 388
BstMBI	GATC	3 cut(s)	78, 352, 385
BstSFI	CTRYAG	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	301, 424
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	310, 389
CviJI	RGCY	7 cut(s)	188, 225, 232, 252, 259, 394, 409
CviKI_1	RGCY	7 cut(s)	188, 225, 232, 252, 259, 394, 409
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	80, 354, 387
DpnII	GATC	3 cut(s)	78, 352, 385
EciI	GGCGGA	2 cut(s)	254, 343
Eco24I	GRGCYC	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	396
FaeI	CATG	2 cut(s)	313, 392
FaiI	YATR	8 cut(s)	77, 92, 198, 290, 306, 311, 321, 390
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FatI	CATG	2 cut(s)	309, 388
FokI	GGATG	2 cut(s)	308, 431
FriOI	GRGCYC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	266
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	2 cut(s)	313, 392
HinfI	GANTC	3 cut(s)	62, 145, 370
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	229, 256
Hpy188I	TCNGA	4 cut(s)	150, 229, 375, 418
Hpy188III	TCNNGA	2 cut(s)	82, 389
HpyAV	CCTTC	3 cut(s)	79, 241, 325
HpyCH4III	ACNGT	2 cut(s)	133, 318
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	313, 392
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	78, 352, 385
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	4 cut(s)	51, 82, 281, 296
LweI	GCATC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	80, 354, 387
MboI	GATC	3 cut(s)	78, 352, 385
MboII	GAAGA	2 cut(s)	220, 395
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	39, 52, 100, 243, 343, 394
MroNI	GCCGGC	1 cut(s)	267
MspI	CCGG	1 cut(s)	268
NaeI	GCCGGC	1 cut(s)	269
NdeII	GATC	3 cut(s)	78, 352, 385
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	313, 392
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	62, 370
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	408
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
Sau3AI	GATC	3 cut(s)	78, 352, 385
SchI	GAGTC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	50, 90, 159, 246, 336
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	162, 265, 328
TaaI	ACNGT	2 cut(s)	133, 318
TasI	AATT	1 cut(s)	276
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	62, 370
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	17, 126, 138, 277
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.