Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004877

Physical Location & Seq

Genomic Coordinates Forward (+)

55150013 .. 55151850

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGACCAAATTCCGTGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATTCAGAGGGTTACTCTCTTTGGTTTTGCGATTACAAATACAATGATGAAAATACAGTTTCATTTGTGAGTTTGAACAAGGTGGGCGGTTTTCTGCAACGGATGGATTTGGCTCGTAAATATGCACTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

76

Amino Acids

8.8

Weight (kDa)

8.73

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	3 - 75	3.9e-26	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0004877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340781 RchiOBHm_Chr7g0229491 RchiOBHm_Chr7g0229531 RchiOBHm_Chr7g0229701 RchiOBHm_Chr7g0229951 RchiOBHm_Chr7g0230081 RchiOBHm_Chr7g0230221 RchiOBHm_Chr7g0231551
rosa_multiflora	Rmu_sc0000693.1_g000061 Rmu_sc0000693.1_g000078 Rmu_sc0001192.1_g000020 Rmu_sc0001211.1_g000131 Rmu_sc0002545.1_g000005 Rmu_sc0003327.1_g000003 Rmu_sc0004110.1_g000010 Rmu_sc0007557.1_g000001 Rmu_sc0010898.1_g000003 Rmu_sc0018024.1_g000001 Rmu_sc0027028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00311400
rosa_rugosa	Rorug07G0227000
rosa_samantha	Rh1AG176700 Rh1CG164200 Rh7AG409200 Rh7AG409900 Rh7AG421800 Rh7CG427200 Rh7CG427900 Rh7CG442000
rosa_wichuraiana	Rw0G001870 Rw0G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	124, 214
AlwI	GGATC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	202, 229
BccI	CCATC	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BseGI	GGATG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	197
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	156
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	33, 161, 225
CviKI_1	RGCY	3 cut(s)	33, 161, 225
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 48, 171
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	42
FokI	GGATG	1 cut(s)	163
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	2 cut(s)	202, 229
Hpy188I	TCNGA	2 cut(s)	55, 202
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	145, 173
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	3 cut(s)	10, 49, 216
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	46
NspI	RCATGY	1 cut(s)	46
PciI	ACATGT	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	202
SetI	ASST	3 cut(s)	21, 132, 219
SgeI	CNNG	7 cut(s)	26, 49, 55, 139, 174, 188, 226
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	99, 111
TspGWI	ACGGA	1 cut(s)	163
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.